Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01587 ATGCAATCCAAGTCTGAAACTGCAAATCAACTAAGGACCGATCAACATTCTTTTCCGCCGAACAATGTTTACTCTGAGCCTTGGTGGCGTGGTGGTGGGTATCCTATGACCCAAGCAGTGGCTGGGGCAAATGCATCGAATTCATCCTCACTGGAATGCCCCAACGCTGATTCTGAATCAAATGATGGTCAATCTTTGTCCAATAGTGGGTTGAATGAGGAAGATGATGATGCCTCTAAAGAATCACCAGCTGCAGCTCGCAATCAATCAGGAAATTACGTTCAAGAACACCAAGGGATGCAGCATGCTTCATCGTCTGCACCATCCATGCGAGATGAATGCTTTACACAGGCTCCTCAGCTCGAACTTGTTGGTCATTCAATAGCATGTGCTTCACATCCTTATCCGGATCCATATTATGCGGGACTGATGGCGGCTTATGGTCCCCACCAGCTGGGATATCCTCCTTTTATGGGAATGCCACAGGCCAGAATGCCTTTGCCCCTTGAGATGACACAAGAACCTGTTTATGTAAATGCGAAACAATACCCAGCAATTCTTAGGCGTAGACAGGCTCGGGCAAAGGCAGAGCTTGAAAGGAAGCTAATAAAAGTTAGAAAGCCATACCTTCATGAATCTCGGCATCAGCATGCAATGAGGAGGGCAAGGGGTACTGGAGGTCGCTTTGCAAAGAAAAATGATGCTACTGAGGACTCTGGCAAAGAAAAGGATGTGGGATCTGGTCCATTGGGATCTTCACAATCAGTTAGTTCATCTGGTTCTGAACCTTTACCCTGTGAGTCTGCTGAAACCTGGAACTCTCCTAATGTGCAACAACTAGATGCCAGAGGATATAAACTTCCTGACCATTATGAAGCGCAGAACTATGCAAACAATAGTGGCCCTTATCATAATCATAGTGGCTTGCAATCTTCCACCTACCATTTGCACTCAGGTGAAAGAGTCGAGGAAGGGGACTGTTCAGGACAACAGCGGGGGAGTATCTCTTCTGAACACACTACACAGAGGCGTCTTGCGATTCAGTAG 1047 0.468 MQSKSETANQLRTDQHSFPPNNVYSEPWWRGGGYPMTQAVAGANASNSSSLECPNADSESNDGQSLSNSGLNEEDDDASKESPAAARNQSGNYVQEHQGMQHASSSAPSMRDECFTQAPQLELVGHSIACASHPYPDPYYAGLMAAYGPHQLGYPPFMGMPQARMPLPLEMTQEPVYVNAKQYPAILRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNDATEDSGKEKDVGSGPLGSSQSVSSSGSEPLPCESAETWNSPNVQQLDARGYKLPDHYEAQNYANNSGPYHNHSGLQSSTYHLHSGERVEEGDCSGQQRGSISSEHTTQRRLAIQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01587 348 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Accr4g01587 348 MobiDBLite consensus disorder prediction 1 22 - -
Accr4g01587 348 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Accr4g01587 348 MobiDBLite consensus disorder prediction 227 244 - -
Accr4g01587 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 229 IPR001289 GO:0003700|GO:0006355
Accr4g01587 348 Gene3D - 172 234 - -
Accr4g01587 348 MobiDBLite consensus disorder prediction 40 72 - -
Accr4g01587 348 MobiDBLite consensus disorder prediction 248 276 - -
Accr4g01587 348 MobiDBLite consensus disorder prediction 1 88 - -
Accr4g01587 348 MobiDBLite consensus disorder prediction 329 348 - -
Accr4g01587 348 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Accr4g01587 348 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Accr4g01587 348 MobiDBLite consensus disorder prediction 209 226 - -
Accr4g01587 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 22 286 IPR001289 GO:0003700|GO:0006355
Accr4g01587 348 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Accr4g01587 348 MobiDBLite consensus disorder prediction 209 276 - -
Accr4g01587 348 MobiDBLite consensus disorder prediction 316 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01587 Accr-Chr4 16570937 16573884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01587 1 274 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.128 1.36e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Accr4g01587 CBFB_NFYA 4.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01587 K08064 - gmx:100808378 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01587 4 16570937 16573884 Accr4g01587 4 16570937 16573884 ECH