Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01564 ATGATGTCTTATTCCAGAAGATCAAGGTATTCTCGATCGCCTTCTCCATACAAGCGATATGGTAGGTCTTTCTCTAGGTCTCCGTATAGGTCAAGGTCTAGAAGTTTCTCAAGGAGCCCTTCAAGGGAAGTGGAGAATCCTGGTAACAACCTGTATGTTACAGGCTTGTCTGCGCGGATTACCAAGAGGGATCTGGAGAAGCATTTTGCAAGTGAGGGAAAAGTGATTGATGTTCATTTAGTTGTTGATCCTTGGACAAGAGAATCACGAGGGTTTGGATTTGTGACGATGGAAACTGTTGAGGAGGCTGACCGATGCATAAAGTATCTCAATCGCTCTGTGCTAGAAGGGCGCGTCATTACCGTAGAGAAGGCTAGAAGACGTCGAGGCCGAACTCCAACCCCTGGCAGGTATCTTGGATTGAGGACTGCTCGGGGTCGTCGTCGCTCTGTGAGCTCCTCCCCTTACCGGTCTCCTAGTTATTCTCCTTACAGAAGAAGCTACAGTCGGTCACCATATTCAGATCGCAGCAGGAGTCGATCTTACTCTCCTTACCACAGCCGTCGGAGGTCGTATTCTCCCTACTACAGCAGGAGGAGGAGGTCCTATTCCCCCTATGACAGACGCAGATCCTATTCTCCTTACAGCAGGTCACCTGTAAGCCGCCGAGATAGATCATACTCTCCTTACAGCAGGTCACCTGTAAGCCGGCGAGATAGATCATACTCTCCCTATGACTCACCTGATGATCGCTACTACAGAAGGCACCGTTATAGGTCCATTTCTCGAAGCATCTCACCAAGGCCAAGGAGACGTTTGAGGAGGTATTCTCGTAGTGTCTCTCCTGTGAAGAGGAGGAGCTCAAGAAGGAGCTATTCTCGAAGTCCATCCCCCCAACCAAGGAGTTGTTCACGCAGGAGGAGCTATTCGCGAAGCCTTTCCCCTAGACCGAGGAGAAGTTCACGAAGGAGGAGCTATTCTCGGAGCATTTCTCCAAGACCAGGAGGCAGTATGAGAGGTGGTTCCTCTAAACGTGGGTATACACCAGTTAGTGATAGAAGCTACTCTAGAAGTCCAAGTGTCGGTGCTACTTCAAGATCAGTATCAAGGTCCCTTACTCCAAGATCAGCTTCTGCTTGA 1140 0.4956 MMSYSRRSRYSRSPSPYKRYGRSFSRSPYRSRSRSFSRSPSREVENPGNNLYVTGLSARITKRDLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTARGRRRSVSSSPYRSPSYSPYRRSYSRSPYSDRSRSRSYSPYHSRRRSYSPYYSRRRRSYSPYDRRRSYSPYSRSPVSRRDRSYSPYSRSPVSRRDRSYSPYDSPDDRYYRRHRYRSISRSISPRPRRRLRRYSRSVSPVKRRSSRRSYSRSPSPQPRSCSRRRSYSRSLSPRPRRSSRRRSYSRSISPRPGGSMRGGSSKRGYTPVSDRSYSRSPSVGATSRSVSRSLTPRSASA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01564 379 FunFam Serine/arginine-rich splicing factor SR45a 3 133 - -
Accr4g01564 379 MobiDBLite consensus disorder prediction 242 256 - -
Accr4g01564 379 MobiDBLite consensus disorder prediction 26 48 - -
Accr4g01564 379 MobiDBLite consensus disorder prediction 209 240 - -
Accr4g01564 379 MobiDBLite consensus disorder prediction 292 310 - -
Accr4g01564 379 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 251 - -
Accr4g01564 379 MobiDBLite consensus disorder prediction 147 190 - -
Accr4g01564 379 SMART rrm1_1 50 123 IPR000504 GO:0003723
Accr4g01564 379 MobiDBLite consensus disorder prediction 257 291 - -
Accr4g01564 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Accr4g01564 379 MobiDBLite consensus disorder prediction 311 326 - -
Accr4g01564 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Accr4g01564 379 MobiDBLite consensus disorder prediction 347 379 - -
Accr4g01564 379 Gene3D - 3 133 IPR012677 -
Accr4g01564 379 MobiDBLite consensus disorder prediction 1 48 - -
Accr4g01564 379 MobiDBLite consensus disorder prediction 125 379 - -
Accr4g01564 379 SUPERFAMILY RNA-binding domain, RBD 36 153 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01564 Accr-Chr4 16316095 16319036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01564 50 164 Eukaryotic Initiation Factors Gene Family AT2G36660 29.565 2.69e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01564 - - gmx:100808038 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01564 4 16316095 16319036 Accr4g01564 4 16316095 16319036 ECH