Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01563 ATGATGTCTTATTCCAGAAGATCAAGGTATTCTCGATCGCCTTCTCCATACAAGCGATATGGTAGGTCTTTCTCTAGGTCTCCGTATAGGTCAAGGTCTAGAAGTTTCTCAAGGAGCCCTTCAAGGGAAGTGGAGAATCCTGGTAACAACCTGTATGTTACAGGCTTGTCTGCGCGGATTACCAAGAGGGATCTGGAGAAGCATTTTGCAAGTGAGGGAAAAGTGATTGATGTTCATTTAGTTGTTGATCCTTGGACAAGAGAATCACGAGGGTTTGGATTTGTGACGATGGAAACTGTTGAGGAGGCTGACCGATGCATAAAGTATCTCAATCGCTCTGTGCTAGAAGGGCGCGTCATTACCGTAGAGAAGGCTAGAAGACGTCGAGGCCGAACTCCAACCCCTGGCAGGTATCTTGGATTGAGGACTGCTCGGGGTCGTCGTCGCTCTGTGAGCTCCTCCCCTTACCGGTCTCCTAGTTATTCTCCTTACAGAAGAAGCTACAGTCGGTCACCATATTCAGATCGCAGCAGGAGTCGATCTTACTCTCCTTACCACAGCCGTCGGAGGTCGTATTCTCCCTACTACAGCAGGAGGAGGAGGTCCTATTCCCCCTATGACAGACGCAGATCCTATTCTCCTTACAGCAGGTCACCTGTAAGCCGCCGAGATAGATCATACTCTCCTTACAGCAGGTCACCTGTAAGCCGGCGAGATAGATCATACTCTCCCTATGACTCACCTGATGATCGCTACTACAGAAGGCACCGTTATAGGTCCATTTCTCGAAGCATCTCACCAAGGCCAAGGAGACGTTTGAGGAGGAGGAGCTATTCGCGAAGCCTTTCCCCTAGACCGAGGAGAAGTTCACGAAGGAGGAGCTATTCTCGGAGCATTTCTCCAAGACCAGGAGGCAGTATGAGAGGTGGTTCCTCTAAACGTGGGTATACACCAGTTAGTGATAGAAGCTACTCTAGAAGTCCAAGTGTCGGTGCTACTTCAAGATCAGTATCAAGGTCCCTTACTCCAAGATCAGCTTCTGCTTGA 1047 0.4938 MMSYSRRSRYSRSPSPYKRYGRSFSRSPYRSRSRSFSRSPSREVENPGNNLYVTGLSARITKRDLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCIKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTARGRRRSVSSSPYRSPSYSPYRRSYSRSPYSDRSRSRSYSPYHSRRRSYSPYYSRRRRSYSPYDRRRSYSPYSRSPVSRRDRSYSPYSRSPVSRRDRSYSPYDSPDDRYYRRHRYRSISRSISPRPRRRLRRRSYSRSLSPRPRRSSRRRSYSRSISPRPGGSMRGGSSKRGYTPVSDRSYSRSPSVGATSRSVSRSLTPRSASA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01563 348 MobiDBLite consensus disorder prediction 242 256 - -
Accr4g01563 348 MobiDBLite consensus disorder prediction 26 48 - -
Accr4g01563 348 MobiDBLite consensus disorder prediction 257 295 - -
Accr4g01563 348 MobiDBLite consensus disorder prediction 209 240 - -
Accr4g01563 348 MobiDBLite consensus disorder prediction 125 348 - -
Accr4g01563 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Accr4g01563 348 SUPERFAMILY RNA-binding domain, RBD 37 153 IPR035979 GO:0003676
Accr4g01563 348 MobiDBLite consensus disorder prediction 147 190 - -
Accr4g01563 348 Gene3D - 3 133 IPR012677 -
Accr4g01563 348 SMART rrm1_1 50 123 IPR000504 GO:0003723
Accr4g01563 348 FunFam Serine/arginine-rich splicing factor SR45a 3 133 - -
Accr4g01563 348 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 251 - -
Accr4g01563 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Accr4g01563 348 MobiDBLite consensus disorder prediction 1 48 - -
Accr4g01563 348 MobiDBLite consensus disorder prediction 316 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01563 Accr-Chr4 16316095 16319036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01563 50 164 Eukaryotic Initiation Factors Gene Family AT2G36660 29.565 1.30e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01563 - - gmx:100808038 213.386