Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01545 ATGATGAAGTGGGAAACAACGGGAATGTTGTCACCTGGACAATCCATCACCAGTTCCAACACGAACTGGATTGCTGAAGATAATCGGAATCCGAGATGGACTCGTGCTGAGAACAAAATGTTCGAGAATGCTCTTGCGCTTTACGATCAGGATACACCAGATCGGTGGAAGAAAGTGGCTTCAATGATCCCAGGGAAGACGGTCGGCGATATTCTGAGGCAGTACCAACAGCTTGAAGATGATGTTTATAACATCGAAGCTGGTTTGGTCTCAGTTCCAGACTATTATCACACCACAAATCCTTCTTCCTCATCTTTCACTTTGGACTGTTGGGCCAATTTTTCTTCTGATTATGATCCCTGGAACGAATTCCATAGAAAGAGAGCGTCCTCTATGAGACCGGCCTCTGAGAATGAAAGGAAGAAAGGAGTCCCTTGGACCGAAGAAGAACACAAATTGTTTCTTATGGGGCTGAAGAAGCATGGTAAAGGAGATTGGAGGAACATATCAAGAAACTTTGTGGTGACTCGAACACCGACTCAAGTAGCTAGCCATGCTCAGAAATACTTCATAAGGCAACTCTCCGGAGGAGGAGGGAAAGACAAGAGAAGAGCGAGCATCCATGACATAACCACAGTGAACCTTACTGAAACTTCAACCAGAACTGCACGAAACAAAATCAAGAAGTCTTCTTCTTGTTCTTCTTCTTCTTCACCGCCAGAGACACGCATGAACATGATGATGCCCTCATCACAGTCACACTCACCATCGGTAAAGCAGAATAATTCTGCAGAAACACAGTTTCAGTGGACCCAGCAACAACAACAACAGCCAATGGATGCTCTGAGTAAACCTGTATTTGATGATGAACTGTTCATGTCTAATTTTTATGGGATTTGTGAGGACTCATCATCCCATGGGAATGGTGATGACTCATCGTCCTTTGATTTTAGAATTGAGGACCAGGATCCGTTCTCAAGTTCTCTTCTTTATCATGGATCTTCTTCTTACTTAGAATCTCTCAGTCAAAACATGGTTTTCCCGATGCCATGA 1053 0.4387 MMKWETTGMLSPGQSITSSNTNWIAEDNRNPRWTRAENKMFENALALYDQDTPDRWKKVASMIPGKTVGDILRQYQQLEDDVYNIEAGLVSVPDYYHTTNPSSSSFTLDCWANFSSDYDPWNEFHRKRASSMRPASENERKKGVPWTEEEHKLFLMGLKKHGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGGGKDKRRASIHDITTVNLTETSTRTARNKIKKSSSCSSSSSPPETRMNMMMPSSQSHSPSVKQNNSAETQFQWTQQQQQQPMDALSKPVFDDELFMSNFYGICEDSSSHGNGDDSSSFDFRIEDQDPFSSSLLYHGSSSYLESLSQNMVFPMP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01545 350 CDD SANT 145 190 IPR001005 -
Accr4g01545 350 NCBIfam myb-like DNA-binding domain, SHAQKYF class 141 193 IPR006447 GO:0003677
Accr4g01545 350 ProSiteProfiles Myb-like domain profile. 25 79 IPR001005 -
Accr4g01545 350 MobiDBLite consensus disorder prediction 218 279 - -
Accr4g01545 350 ProSiteProfiles SANT domain profile. 146 194 IPR017884 -
Accr4g01545 350 MobiDBLite consensus disorder prediction 1 21 - -
Accr4g01545 350 FunFam Transcription factor SRM1 18 92 - -
Accr4g01545 350 CDD SANT 32 78 IPR001005 -
Accr4g01545 350 Gene3D - 24 92 - -
Accr4g01545 350 ProSiteProfiles Myb-like domain profile. 138 190 IPR001005 -
Accr4g01545 350 SMART sant 29 81 IPR001005 -
Accr4g01545 350 SMART sant 142 192 IPR001005 -
Accr4g01545 350 Gene3D - 144 194 - -
Accr4g01545 350 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 26 276 IPR043363 -
Accr4g01545 350 FunFam transcription factor MYB1R1 144 195 - -
Accr4g01545 350 SUPERFAMILY Homeodomain-like 140 193 IPR009057 -
Accr4g01545 350 Pfam Myb-like DNA-binding domain 145 190 IPR001005 -
Accr4g01545 350 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Accr4g01545 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 194 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01545 Accr-Chr4 15662656 15663897 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr4g01545 Myb_DNA-binding 5.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01545 - - rcu:8286480 295.434