Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01535 ATGAGCACGATGACTGAGAGAAACGACCCTCCCGCCATTTCAATGAAGGGACCATCTTCATCGTCTTCTTCAGGCCCTCCTCTGAGCGCCATAGACAGGTTCCTGTGGGGCCAACTCAGTCACTTGTCTGCTCGCTGGCCTAACATCAGTGACGACGACATAGAAGCAAGTTTAATGGAAGGATTCATAGGAAATAATAATAACATGAATGAAGTTCATCACATGATGATCCCTACAGCAGTACTGAATAAACAAGTTCAAGTAGGGAAGAGAATCAACAAGAAAGGCTCTTCTTCTTCCTCCTTGATCAAAGGACAGTGGACCGACGAAGAAGACAGGAAACTGGTGAAGCTGGTGAATGAACATGGAGTGAGGAAGTGGGCTCAAATAGCTGAGAATTTGGAGGGAAGAGCTGGGAAGCAGTGCAGGGAGAGATGGCACAATCATCTACGTCCTGATATAAAGAAGGATAGTTGGAGTGAGGAAGAAGAGAGAATATTGGTAGAAGCACATGCAAAAGTAGGGAACAGGTGGGCAGAGATTGCAAAGAGAATTCCAGGAAGAACAGAGAACTCGATCAAGAACCATTGGAATGCCACCAAAAGGAGACAGAACTCCAAGAGAAAGCACAAATCTTCAAACAAAACCTCCACCAACAACAATGGAAGAAAGCCTCCTTCTTCCATTCTTCAAGATTACATCAAAAGCAAGACCCTCTCCAACAACAACCACCCCACCATCGACGAAGATCCCTCTCATTATGAACCTGTGATGGCTGAAGCATTTGATGATGATGAGCTTCTCTTCATGCAACAGTTCTTCCTGGAGAATTCTGACCAGAACCAGCAGGTTCCGTCCACTTTGGACCGTTATCGAACAGATGGTGGGCATGAAGGTTATCTTCCTGAACAGAGTGTTCCTGCCACTACTATTGGTGGTCCCATGGTGAAACAAAACCATCATCATCATTCTGATCTGTTTCTGGCTCAGTTATTGAATGGGGTTGGTTATAATCCGTCCATTTTCTGCTGTGATTATGGAAAAGATCAAAACTTGAACATGGCTCTGCCGGTTGTGGATGATCATCAGCAAGCTTGGTATGATGCAAAGAGAGAGATGGATTTAATGGAATTGGTTTCCTCTCAGTTTTCAACTAGCACCAGCAACAGAATCTTCTAG 1179 0.447 MSTMTERNDPPAISMKGPSSSSSSGPPLSAIDRFLWGQLSHLSARWPNISDDDIEASLMEGFIGNNNNMNEVHHMMIPTAVLNKQVQVGKRINKKGSSSSSLIKGQWTDEEDRKLVKLVNEHGVRKWAQIAENLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHAKVGNRWAEIAKRIPGRTENSIKNHWNATKRRQNSKRKHKSSNKTSTNNNGRKPPSSILQDYIKSKTLSNNNHPTIDEDPSHYEPVMAEAFDDDELLFMQQFFLENSDQNQQVPSTLDRYRTDGGHEGYLPEQSVPATTIGGPMVKQNHHHHSDLFLAQLLNGVGYNPSIFCCDYGKDQNLNMALPVVDDHQQAWYDAKREMDLMELVSSQFSTSTSNRIF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01535 392 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
Accr4g01535 392 CDD SANT 158 201 IPR001005 -
Accr4g01535 392 SUPERFAMILY Homeodomain-like 102 197 IPR009057 -
Accr4g01535 392 CDD SANT 107 150 IPR001005 -
Accr4g01535 392 PANTHER MYB PROTEIN-RELATED 104 226 - -
Accr4g01535 392 MobiDBLite consensus disorder prediction 187 229 - -
Accr4g01535 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 205 IPR017930 -
Accr4g01535 392 ProSiteProfiles Myb-like domain profile. 99 150 IPR001005 -
Accr4g01535 392 MobiDBLite consensus disorder prediction 1 26 - -
Accr4g01535 392 Pfam Myb-like DNA-binding domain 107 164 - -
Accr4g01535 392 MobiDBLite consensus disorder prediction 200 214 - -
Accr4g01535 392 ProSiteProfiles SANT domain profile. 154 205 IPR017884 -
Accr4g01535 392 Gene3D - 157 227 - -
Accr4g01535 392 FunFam Transcriptional activator Myb isoform A 103 156 - -
Accr4g01535 392 Gene3D - 103 155 - -
Accr4g01535 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 154 IPR017930 -
Accr4g01535 392 SMART sant 103 152 IPR001005 -
Accr4g01535 392 SMART sant 155 203 IPR001005 -
Accr4g01535 392 MobiDBLite consensus disorder prediction 215 229 - -
Accr4g01535 392 FunFam Transcription factor MYB119 157 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01535 Accr-Chr4 15549863 15552154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01535 24 386 MYB Transcription Factor Family AT5G58850 37.972 2.20e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr4g01535 Myb_DNA-bind_6 3.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01535 K09422 - pvy:116129500 277.33