LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr4g01533	ATGCCGACCATTGCCAAGCGTAAGGTCGCGAAGGAAGCTCTTTCTGAGACAACGGCCATCTTGCCGGAGAAGACAGCTTCCGATGTCCGATCTGACCCCAACTCCACTCCCTGTAAGAGGAAATTGAGATCCGATGGGCCGCTGATTATGGACAGTCCATTCTCTTCACCCACCAAATGGAAATCGCCTCGACAATGTAGCAGTGAGAGTCCAAATCGCGCTGTCACCGCAAAAGAGACGGTGGCTAATGAAGGTGAAATCAAATCGCATAAATCGCCGTTTAAGTCAACGCAGGATAGTTTTGCTGATAAACCGAAATGGAACCCCAAAGATGGTGAGCAAGTAAGGACAGTGAAGGAGGCATTGCACGTGTCTACGGCACCATCTACAATTGTCTGCCGTGAAGACGAGCAGAATATGGTTTTCGAGTTCTGCAAGTCATGTGTTGAACATAATAAGGCCGGGAGTATGTACATATGTGGGTGTCCCGGCACTGGAAAATCGCTATCCATGGAGAAAGTAAAAAAGCTTTTAGTCGATTGGGCTAAACAGGCAGGCCTCCTTCAGCCCGATGTCTTATCTGTGAACTGTACATCACTTGCAAATACATCTGACATTTTCAGCAAGATGCTTGGATTAAACCAAACACAGGGAAAAAAGACTTCAGCTTCTCCCTTACAACAACTTCAGAGCTTGTACTCTCAGAAGTCGTCAAGCCTGAACATGATATTGATGGTGGTTGACGAATTAGATTATCTGATCACCAAAGATAGGGCTGTGCTTCACGATCTCTTCACTCTCACCACTTTCCCATTTTCTAGATGTATATTAATAGGGATATCAAATGCAATTGACCTTGCCGATCGTTTTCTTCCGAGGTTGAAATCATTGAACTGCAAGCCTATAATTGTAACATTTCGAGCATACTCTAAAGACCAGATCCTTAGCATCCTGAAAGAAAGGCTAAGGGAACTTCCTTACACTGTGTTCCAACATCAAGCACTAGAGCTCTGTGCTCGGAAAGTTGCTGCTGCTTCTGGAGACATGCGAAAGGCTCTTTGTATTTGCAGGAGTGCAATTGAGATGCTAGAGGCAGAAATTAGAGAATCTATTGGCCTTTCAGAAATTTCATTGGAAGAGAAAGCTTCGCCTCGACAAAATTTAGCTTCTGACCCCGATCATGTAAAACAAGAAGAATTTGATACTGTAAGGATTGATCATGTGGCTCTAGCCTTGTCCAAAACATATAGATCTCCTGTGGTGGATACAATACAATCTCTACCACATCATCAACAGATTATCCTTTGCTCTTCGATGAAACAGTTCCGTGGAGCAAAGAAAGATACAATCCTTGGTGAGTTGTACAGATCTTACACGGGCATATGTAAATCATCAATGATTCCTCCAGCTGGAATTTTGGAATTTTCGAACATGTGCAGAGTATTGAATGATCAGGGGCTTATTAAACTAGGACCATCACGGGAGGACAAATTGAAGAGGGTGACCCTAAACATAGATGAAACTGATATTACCTTTGCATTGCAGGGAATTCGTTTCTTTAGAAACTGTCTTCAATAA	1578	0.4335	MPTIAKRKVAKEALSETTAILPEKTASDVRSDPNSTPCKRKLRSDGPLIMDSPFSSPTKWKSPRQCSSESPNRAVTAKETVANEGEIKSHKSPFKSTQDSFADKPKWNPKDGEQVRTVKEALHVSTAPSTIVCREDEQNMVFEFCKSCVEHNKAGSMYICGCPGTGKSLSMEKVKKLLVDWAKQAGLLQPDVLSVNCTSLANTSDIFSKMLGLNQTQGKKTSASPLQQLQSLYSQKSSSLNMILMVVDELDYLITKDRAVLHDLFTLTTFPFSRCILIGISNAIDLADRFLPRLKSLNCKPIIVTFRAYSKDQILSILKERLRELPYTVFQHQALELCARKVAAASGDMRKALCICRSAIEMLEAEIRESIGLSEISLEEKASPRQNLASDPDHVKQEEFDTVRIDHVALALSKTYRSPVVDTIQSLPHHQQIILCSSMKQFRGAKKDTILGELYRSYTGICKSSMIPPAGILEFSNMCRVLNDQGLIKLGPSREDKLKRVTLNIDETDITFALQGIRFFRNCLQ	525

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr4g01533	525	PANTHER	CELL DIVISION CONTROL PROTEIN 6-RELATED	16	523	-	-
	Accr4g01533	525	Pfam	AAA lid domain	330	366	IPR041083	-
	Accr4g01533	525	Pfam	AAA domain	153	269	IPR003593	GO:0016887
	Accr4g01533	525	MobiDBLite	consensus disorder prediction	1	111	-	-
	Accr4g01533	525	Gene3D	-	299	423	-	-
	Accr4g01533	525	FunFam	Cell division control protein	112	297	-	-
	Accr4g01533	525	FunFam	Cell division control protein	298	424	-	-
	Accr4g01533	525	FunFam	Cell division control protein	427	517	-	-
	Accr4g01533	525	PIRSF	Cdc6	2	525	IPR016314	GO:0006270\|GO:0051301
	Accr4g01533	525	CDD	Cdc6_C	428	510	IPR015163	-
	Accr4g01533	525	MobiDBLite	consensus disorder prediction	55	77	-	-
	Accr4g01533	525	CDD	AAA	137	298	-	-
	Accr4g01533	525	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	121	374	IPR027417	-
	Accr4g01533	525	Gene3D	-	111	298	IPR027417	-
	Accr4g01533	525	Pfam	CDC6, C terminal winged helix domain	435	513	IPR015163	-
	Accr4g01533	525	SMART	Cdc6_C_2	435	514	IPR015163	-
	Accr4g01533	525	Gene3D	-	424	515	IPR036388	-
	Accr4g01533	525	SUPERFAMILY	"Winged helix" DNA-binding domain	420	523	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr4g01533	Accr-Chr4	15510917	15516134	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr4g01533	29	524	Core DNA Replication Machinery Family	AT2G29680	59.961	0.0	585

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr4g01533	K02213		-	gmx:100791200	683.33