Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01506 ATGTGCAGTGGTTCCAAGAGGAAACCTTCTGAAGCAGGTTTCGTTATGGAGGGAAAATATGGGGAACAAGAGGGGCGGCTTCACAAGACTTCTCTGTTGCTTGAACTTGCGGCCTCTGATGATGTTGTGAGTTTCAAAGATGCAGTTGAACAAGAAGGTCTTAATGTTGATGAGGCATGCTTGTGGTATGGAAGGAGGGTTGGCTTAAAGAAATTGAGCTATGAAGAGAGGACTCCTCTCATGATTGCTTCTATGTTTGGAAGCAAGGGCGTGTTGAGTTATATACTCGGAACCGGTCATGTCGATGTTAACAGCACTTGTGGATCAGATAGAGCTACTGCCCTTCATTGTGCCGTTGCTGGGGGTTCAGCCTCATCCCCTGAGGTTGTTAAGCTTTTGATTGATGCATGTGCAGATGTTAGTGCCGTTGATGCTAATGGTAACCAACCCTGTGACTTGATAGTATCCGGGATTAATTCAATATTCAGTTTAAGGAAGAGGATCCTACAAGCCATACTGAAAGGTAAGGATGTTAATGATGAGGCAAGTCTCTCGTTTGTGGATACAGCTAGCCAGGTGGAGGAAAAGCAACAGCCAGATATGGCTGCATCGCGTGTTTCAAAAGATGGGACTGAAAAGAAAGATTATCCTATTGATCTTTCTCTTCCTGACATAAAGAGTGGGATTTATGGTACTGATGAGTTTAGGATGTATACATTCAAGGTAAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCTAGGCGACGGGATCCTAGAAAATATCATTATAGCTGTGTCCCTTGCCCGGAGTTTCGGAAGGGATCGTGCAGCAAGGGAGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACACGGCTGTGCAAGGATGAGGGTGCTTGCAACAGAAGAGTTTGCTTTTTTGCTCATAAGCCTGAGGAGCTTCGACCGTTGTATCCTTGTACCGGTTCAGCTATACCTTCTCCTAGATCATTTTCATCGGGTTCTTGTTCATTGGATATGGGATCGCTTAGCCCTCTCTCACTGGGTTCTTCGTCTGTCATGACACCTCCAGTCTCAACCCCACCTCTGACTCCTACTGGTGCATCTTCTCCTGTTGGTGGAACCATGTGGCAGACCCAATTTAATGGAGTCCCTACCCTGCAATTGCCAAGAAGCAGGCTAAAAACTGCTTCAAATGCTAGAAATGTTGATTTAGACCTTGAGTTACTTGAACTTGAAAATCACCGGCGCAGGCAGCAGATGATGATGGATGAGATTTCTGGTCTTTCCTCGCCATCAAGCTGGAAGAACTCCATGCCTGACAGTCATTCTTTTCCGGTCTCTTTCAGTGATCAAGCTGGAGAGCTTAATAGGCTTGGAGTAATGAAGCCTACCAACCTTGATGACATTTTCGGGTCAGTTGATTCATCAATTTTGCCTAAATTACAGGGAATTTCTCTAGACACTGCTGGATCTCAGTTGCAATCTCCAACCGGGTTCCAGGCGCTTCAGAATGCAAACCTGCATCTTCGAAGCTATTCTTCTGGACTGTCCAATTCAAACGGGATGGGATCGCCATCTTCTGTGAATGATCATCCATCTGTATCAGCAGCAACCACAATGGCCTTGAATGCAAGACTTGCTGCCTTTTCTAAGAGAAGCCAGAGCTTTGTTGAGCGTAGCAGTGCAATAAACCGTCATCCGGAGCTTTCTTCTCCGGTTTCTTCAACAACAAAATCTTCTGCCTTATCAAACTGGGGATCCCCTGATGGAAAGTTGGATTGGGGCATCCATGGAGAAGAGTTGAATAAGCTGAGGAAATCTGCTTCCTTCGGATTGCGAAGCAGTAGAAATACCCAAGTGCGAGAAAATCTCGATGAACCTGATGTTTCATGGGTTCATTCACTTGTAAAAGATGCTGCTCCGCCAGAATCTGGTCACTTTAGTGTTGAAGAACAGCAAAAGCAGCAGCTGCAATGCCATCGTAACAATGGAAACGATGTAGTTCCAGCTTGGATGGAACAATTTAACATTGAGCAGGAGCAAATGGTAGCATGA 2121 0.4578 MCSGSKRKPSEAGFVMEGKYGEQEGRLHKTSLLLELAASDDVVSFKDAVEQEGLNVDEACLWYGRRVGLKKLSYEERTPLMIASMFGSKGVLSYILGTGHVDVNSTCGSDRATALHCAVAGGSASSPEVVKLLIDACADVSAVDANGNQPCDLIVSGINSIFSLRKRILQAILKGKDVNDEASLSFVDTASQVEEKQQPDMAASRVSKDGTEKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEGACNRRVCFFAHKPEELRPLYPCTGSAIPSPRSFSSGSCSLDMGSLSPLSLGSSSVMTPPVSTPPLTPTGASSPVGGTMWQTQFNGVPTLQLPRSRLKTASNARNVDLDLELLELENHRRRQQMMMDEISGLSSPSSWKNSMPDSHSFPVSFSDQAGELNRLGVMKPTNLDDIFGSVDSSILPKLQGISLDTAGSQLQSPTGFQALQNANLHLRSYSSGLSNSNGMGSPSSVNDHPSVSAATTMALNARLAAFSKRSQSFVERSSAINRHPELSSPVSSTTKSSALSNWGSPDGKLDWGIHGEELNKLRKSASFGLRSSRNTQVRENLDEPDVSWVHSLVKDAAPPESGHFSVEEQQKQQLQCHRNNGNDVVPAWMEQFNIEQEQMVA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01506 706 SMART ANK_2a 110 142 IPR002110 GO:0005515
Accr4g01506 706 SMART ANK_2a 75 105 IPR002110 GO:0005515
Accr4g01506 706 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Accr4g01506 706 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Accr4g01506 706 PANTHER UNKEMPT FAMILY MEMBER 35 660 IPR045234 -
Accr4g01506 706 Gene3D - 275 337 - -
Accr4g01506 706 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Accr4g01506 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Accr4g01506 706 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Accr4g01506 706 SUPERFAMILY Ankyrin repeat 65 154 IPR036770 -
Accr4g01506 706 Gene3D - 22 198 IPR036770 -
Accr4g01506 706 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Accr4g01506 706 Pfam Ankyrin repeats (many copies) 76 134 IPR002110 GO:0005515
Accr4g01506 706 MobiDBLite consensus disorder prediction 582 606 - -
Accr4g01506 706 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01506 Accr-Chr4 15303530 15305650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01506 28 701 C2H2 Transcription Factor Family AT5G12850 39.525 5.20e-147 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr4g01506 Ank_4 1.7e-05 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01506 - - aprc:113846970 910.983