Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01500 ATGGCGGTGGAGGAGTTGGAGTCCCCGCTTTGCAGAAAGCGCAAACGAGGGTATGGAAGAATAAAGTTCATCGTCAATGATAGAGTGGAGGTGAGGAGTACGGAAGATGGCTTTTTAGGTTCATGGCATCCAGGGACTGTGATCCAATGTGGGAAGCAGAAACGTCATGTTCGATATGACAATATTTTAGATGAGGATGGGTCAACTTTTCTTGTCGATATAGTGGATGTTCCAGATATTTTGGATGGCGAAAGTTCCACAATTTACAATGAACGTGGACATATTAGACCAGCACCACCTTTGAAGCAGTTTAGTAATTGGGACCTTCCGTTTGGTCTATGTGTTGATGTGAATTATGAAGAAGCTTGGTGGGAAGGCATTATTTTTGATCATAATGATGGGATGAAGGAGAGATCCATATTCTTCCCAGATTTGGGTGATGAAATGAAGGTCCAAATTGACCATATACGTATTACTCATGATTGGAGTGAAGTTACAGAGGAATGGGAGAGACGAGGCATGTGGGTATTTCTTGAATTGGTTGAAGAGGTTGAACAGAATTCTTATGTTGCAGTTTCAGTAAAGCAAATTTGGTATGATGTGCGTGCCAAAGAAAATTTCAATAAGATTAAAGACTGGACTTGTAATGTGAAGGAATTGTGGAGAGATCTGGTACTTGAGGTAATTAATGACTACTTTTTACTTACAATGGGAGAAATTCTCAAGGCCATCGATCTTTCAAAAGATGATCGCTTGATGGAAGCACCAGGACGAGAGTCAGGTGAACCTACTGCTGATATTCACTTAAATCTTGAAAGAAGTTCAGACAAATTTCCTTCTGTTTCAAATTCTGATGATCGGTTAACTAGCAAATCAAATATTCCTTATGACGCTGTTCCCAATAATGCATTTGTCAATTGCATAACTTTGGCTGAGAACCATTTGGGAAAAGGTGACACGTCAAATTTCTTAGATGCTGATCAAAACAGTGGTAACATCATTCATATCCAGGAGAAATACGATTTGGAGACTTTGGGGGAGAGAGTGTCAAATACGACTGCGGTGGCAGACTTACACATGTCCTTCCCTGAGAATGAAGGATTGGTGCAGCCGGAATCTATATTACCAGATATTCCTGAAGGAATTTCTGGTCAGGATTGTGGTACTTCTGGTGAAGTAAATTATGGTGCTGGGAGTTACAAAAGTAATAGACAAGGGGGATTATCAATTCGCAAAAGGTCGACTGAATGGAAACCTCTGATACTTTCTGAAGTTGAACTCTGCCCTGATTCTGTTCATCAATATGCACTTGCATCTGGGAGGAAGATCAGGGAACAACTGAAGACAGATGCCAGAAAACATATTGCATATCTTGGATGGAAAATTGAGTGGAAGCAACATCCTAATGGCTATCAACCAAGACAATTTAGGTACACCTCACCTGCGATAGAGGGAAAAAAGGTAGTTTACATGACACTTCGTGAAGTTTGTCAACATATTGAAAAGGACACCAATATGGACTCTTTGTTGGCCAAAGAGGATCAGAGAAGGACGTGTTCAATTGACAGTAATGATTCACATCCTGAAATTTTGCCACTTCCTGATGCTGAAGACATAGTTGAACGCGACTATTACCCTGAAGCTGTTTTGAGATATTACTTGCTTCCATTAGAGAGTGGCCACGCTGATGTTAAAAGGATTGTGGTGCCGAAGGCAAGAAAACACCTGTTAGCAGAAGGATGGACTTTTGAGAATCCAACCATAAAAGGAAGGGGAGTTATCTACATTTCACCACAAAATCAGCGTTTTGGATCACTTCGAACAGCATGCAGAAAATATATTGAAGAATATCTTCCTAAGTGGATTAGTACTGGAGTAATACCTCTGGATGTTTCAAGGATAAATGAAGAGAACACTGGTCTGGTTGACAGTGATGAATTATCGTGCTGTGTGTCCCGATTGCTTCAAAACGAGCCTGAATTGTATAATGTAAATGGTGCACCAGCAAGCAGATTAATTGGGCAATGCAAGCCAAAACGCTCAAAGAAGCTAAAGTCCCAAGATAATCAGAGAGAGATGTATTCTACATCTGACAGCGATATCTCACTTCCTGCAATTTTGCCACCTCATTCTGTTGAAGATGTAATTGAACCTGAATTTTGTCCTGAAGCTGTTTTGAGATATTACTTATATTCATTGGAGAAGATTCCCGGCGATGTTAAAAAATGCATGATACTAAAGGCAAGAAAACACCTGTTAGCTGAAGAATGGAATCTTGAGTATCCAACCATAAAAGGAAGGGGAATGATCTATATGTCACCACAAAATGTGCGTTTTGGCTCACTCCGAGTAGCGTGTGAAGCACATATTAAAGAATGTCTTCCTAAGTGGATTAGTTCTGGAATGATGCCTGTAGATGGTTTGGACATAAATGAAGAGAAAATGAGTCAAGTTGACAGTGATGAGCTAGCATCCTATGTCTCCCAATTGCTTCAAAAGGAGCCTGAATTGTCTTATTTAAACGAGGTACCAGAAAGCAGATCAACTGGGCATTGCAAGCTCAAACCCTCCAGGAATCTAAAATCTAGGCCACCCAAGATCCAGAAGAAAAGATTGCCTATTCGGCTACAAAGATCAAGCAAAAGAGTGCAGAAGGTGTGTGCTCCTTGTTCATCAAACCAGAAAGCTCAAAATGTCCTGTCCTGGTTAATAGACAGCAATGTTTTGTTACCAAGATCTAAGGTACATTACCAGGCAAGAGTCATAGGTCGTCCTATGGCTGAGGGGCGAATAACTCGTGATGGAATCAAGTGCAGCTGTTGTCAGAAGCTATATAGTATTGGTGGCTTTGGAGGTCATGCAACCGGTCAACGTAATTGCAGGTCAGCAGCTGCTAATATTCTTTTGGAGAATGGCAAGTCTCTCCTAGATTTTCAGAGGCAGATAATGAATGAACATAGGACAAGAGGAACTACAAAAACACCATCGAGAAGTGGATATCTAGATGAGAATGATGGCATTTGTTCTGCTTGTCAATATGGGGGTGAACTAATATTATGTGATAATTGCCCATCTTCTTTTCATCAAAGCTGCATGGGTTTGGAGGATATCCCTGAAGGAGACTGGTTTTGCCCAGCGTGTTGTTGTGGAATTTGCCACCAAAGTAAACCTGAAGGGTCTGATGATGAAACACTTTTGACTTGCAGTCAGTGTGAACATAAATATCATGCTAAGTGCTTGGGAAAAAGCTCTGTATCAATGTCCGGAAGATGTCTGAAAAATTGGTTTTGTGGAAAAAGTTGTGAAAAGATACATGCAGGCCTTCATAAGCTATTAGGAGAACCTATTGCCGTGGGTGTGCACAATTTAAACTGGACGTTGCTGAAGTGTGCTGACTATGAGACTTGTGATGTTGGGAATGGTAGAAATGACCTAGAGGTGGAGAGTTACAGCAAACTCAATGTGGCGCTTTCAGTGATGCATGAATGTTTTGAGCCCTTGAAGGAATCTTACTCAGGCAGGGATGTCGTGGAAGATGTTATTTTTAGCAGACGGTCAAAGCTTCATCGATTGAACTTCCAAGGTTTCTATACTGTACTTCTGGAGAGAAATGAAGAAGTGGTAACTGTGGCAACTGTTAGGATCTATGGAGATAAGGTAGCAGAATTACCTCTTGTCGGTACCAGATTTCAGTATCGTCGCCTTGGAATGTGTCGCATTTTAATGGATGAGCTTGAAAAGAGGCTCATGCAACTAGGGGTAGAGAGGATAGTTTTGCCTGCTGTTCCAAGTGTGGTAGATACGTGGGTCAACTCTTTCGGCTTTTCAAAGATGACAAATTCTGAGAGATCACAGTTTCTGGACTGTACTTTTCTTGACTTTCAAGATACCGTCATGTGCCAGAAACTTTTGACCAAGAATCGTCCAGCTCTAGTTTTGCCAACAGAGAGCCACACAAAACCACCTGAAGTGTTACCTGTAAGTGGTGGTACTGGTTTTGATCATCAGTCCAGTCTAGTATCTGAAGTATATCAGGAAGGAGATATTGACAGAAATGAGACTACGGATCTACAAATAGTGGATGCTTCTGCCGGCAATGATGGTAATCTTGGTAATGATGCCCCTACTCCGGTTAACATGGTGAAGCCGGCTAATTCTAAGGCCGAACAATCGCAGAATGGAAACATTCCAGAATGCTCATTTGAAGATGGCCACCGCTTAAAACATGATTCCACCAGTAATGCTGCACAATATAAGTACTACGAGCGAAGGAAAACGAGCATGAAAAGATGA 4293 0.4132 MAVEELESPLCRKRKRGYGRIKFIVNDRVEVRSTEDGFLGSWHPGTVIQCGKQKRHVRYDNILDEDGSTFLVDIVDVPDILDGESSTIYNERGHIRPAPPLKQFSNWDLPFGLCVDVNYEEAWWEGIIFDHNDGMKERSIFFPDLGDEMKVQIDHIRITHDWSEVTEEWERRGMWVFLELVEEVEQNSYVAVSVKQIWYDVRAKENFNKIKDWTCNVKELWRDLVLEVINDYFLLTMGEILKAIDLSKDDRLMEAPGRESGEPTADIHLNLERSSDKFPSVSNSDDRLTSKSNIPYDAVPNNAFVNCITLAENHLGKGDTSNFLDADQNSGNIIHIQEKYDLETLGERVSNTTAVADLHMSFPENEGLVQPESILPDIPEGISGQDCGTSGEVNYGAGSYKSNRQGGLSIRKRSTEWKPLILSEVELCPDSVHQYALASGRKIREQLKTDARKHIAYLGWKIEWKQHPNGYQPRQFRYTSPAIEGKKVVYMTLREVCQHIEKDTNMDSLLAKEDQRRTCSIDSNDSHPEILPLPDAEDIVERDYYPEAVLRYYLLPLESGHADVKRIVVPKARKHLLAEGWTFENPTIKGRGVIYISPQNQRFGSLRTACRKYIEEYLPKWISTGVIPLDVSRINEENTGLVDSDELSCCVSRLLQNEPELYNVNGAPASRLIGQCKPKRSKKLKSQDNQREMYSTSDSDISLPAILPPHSVEDVIEPEFCPEAVLRYYLYSLEKIPGDVKKCMILKARKHLLAEEWNLEYPTIKGRGMIYMSPQNVRFGSLRVACEAHIKECLPKWISSGMMPVDGLDINEEKMSQVDSDELASYVSQLLQKEPELSYLNEVPESRSTGHCKLKPSRNLKSRPPKIQKKRLPIRLQRSSKRVQKVCAPCSSNQKAQNVLSWLIDSNVLLPRSKVHYQARVIGRPMAEGRITRDGIKCSCCQKLYSIGGFGGHATGQRNCRSAAANILLENGKSLLDFQRQIMNEHRTRGTTKTPSRSGYLDENDGICSACQYGGELILCDNCPSSFHQSCMGLEDIPEGDWFCPACCCGICHQSKPEGSDDETLLTCSQCEHKYHAKCLGKSSVSMSGRCLKNWFCGKSCEKIHAGLHKLLGEPIAVGVHNLNWTLLKCADYETCDVGNGRNDLEVESYSKLNVALSVMHECFEPLKESYSGRDVVEDVIFSRRSKLHRLNFQGFYTVLLERNEEVVTVATVRIYGDKVAELPLVGTRFQYRRLGMCRILMDELEKRLMQLGVERIVLPAVPSVVDTWVNSFGFSKMTNSERSQFLDCTFLDFQDTVMCQKLLTKNRPALVLPTESHTKPPEVLPVSGGTGFDHQSSLVSEVYQEGDIDRNETTDLQIVDASAGNDGNLGNDAPTPVNMVKPANSKAEQSQNGNIPECSFEDGHRLKHDSTSNAAQYKYYERRKTSMKR 1430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01500 1430 Pfam PHD-finger 1007 1048 IPR019787 -
Accr4g01500 1430 CDD Tudor_Agenet_AtDUF_rpt1_3 23 100 - -
Accr4g01500 1430 SUPERFAMILY FYVE/PHD zinc finger 994 1047 IPR011011 -
Accr4g01500 1430 SMART PHD_3 1007 1048 IPR001965 -
Accr4g01500 1430 SMART PHD_3 1049 1101 IPR001965 -
Accr4g01500 1430 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1184 1283 IPR016181 -
Accr4g01500 1430 Gene3D - 1161 1290 - -
Accr4g01500 1430 Pfam Tify domain binding domain 929 981 IPR032308 -
Accr4g01500 1430 PANTHER PHD FINGER PROTEIN 12 727 1403 IPR042163 GO:0003714|GO:0045892
Accr4g01500 1430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 982 1049 IPR013083 -
Accr4g01500 1430 Pfam Agenet domain 26 100 IPR008395 -
Accr4g01500 1430 ProSiteProfiles Zinc finger PHD-type profile. 1005 1050 IPR019787 -
Accr4g01500 1430 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1143 1304 IPR000182 GO:0016747
Accr4g01500 1430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1050 1104 IPR013083 -
Accr4g01500 1430 CDD NAT_SF 1199 1259 - -
Accr4g01500 1430 SMART agenet_At_2 107 164 IPR014002 -
Accr4g01500 1430 SMART agenet_At_2 21 82 IPR014002 -
Accr4g01500 1430 MobiDBLite consensus disorder prediction 1386 1430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01500 Accr-Chr4 15178235 15185050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01500 16 245 PHD Transcription Factor Family AT5G58610 46.154 1.14e-62 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr4g01500 Agenet 6.3e-17 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01500 - - pcin:129318355 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01500 4 15178235 15185050 Accr4g01500 4 15178235 15185050 ECH