Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01461 ATGAACCAAAAGGACATCGTTACATTCTTGACGACAACTATAGATAGTTTCATTCAAGATCGGTTAATCGACAAAGAAAGAAGGATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCTGCAGAAGATGAAAGCATCGATAAAGAAAGTGAGGTTCGGTACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATAGAAGCCCTTGAAGAAGCTATTAATACCTATAACATGGAAACTAAGATTGCTCGATTAGATTATGCTGAGAAGATGTTACAAGTATGTGCCATGTTAAATCCCGATCGGAAAACCGCCGGAGTTCCAAATTTCTACCTCTCAGCTTGGGCCCACCTTAACCTCTCTTATCTATGGAAGTTGAGGAACAATGTTCAAAACTCAATTTTTCACGCTCTAGAGATGTTCATCGTTGACCCTTTTTTCTCAAGGATTGACTTTGCACCAGAGCTTTGGAAAGATCTGTTTCTTCCACATATGAGTTCCATTGTAGGTTGGTATTCAGAGGAGAGGCATAGGCTCATGATGGAAGTTATACCTGACTCTACAGATTTGTCTTTTACAGCTGATTTTGATCAGTTCTTCAATGAGTCTTTGATATGTGCTATGAGGCCACATCAAGTAGAGAAACTGCAGAATCTGGAGAAGCTATATGGAGAGTCATTGGACAAGAACACAACACTATATGCAAAGTATTATAAGGATTGCTTTAATCCTGATTCAACAACATCCAGCAAGAAGGCTCCTATGTTACCGATCGCCGAGCCACCGATGACACCTTTGCATGAGTTGAGCTGCTCCATTCCTGATTATGTTAAATTCGGTCCTATATTGCCTAAAAGTGCAGGGTTTTCTCCTGCTCTAAAAGCTAAAGATGGTGCAAACGAAACTATCAGAGGGAATGTGACTTCCAGCCATTCACAGAAGGCAGACAAGTCATCCTCTTCATGGGGTGCTAAGGAGAAAACCATTGGAGAGTATGAAGATTCAGATGATGACCTTGATGATCCATACATTGATCGAGATAGAAAAACTCAAACTACTTTGTCTCCTAGAATTAAGGGTCAGGATATTGAGCCAAAAGTACATCAACTGAACCAGAAGAATCAAATATATTCTCCTCCTGTTTTCTCTCCTTCGGATTCTCCAAGAGCAACTCCTGAAACTTCATCTTCACTTCGTGCCATACACACTAAAGGAGAACCCAAATGTCTGCGCTTATTATCTAGGCGTTTTTCAGACACAAGTATTTTCAACTCTTCACCAATATCTCCACACCTGAGTACTGATCACAGCATCAGCTCAGAAGATTCTGATAACGAAATAATGGGCGTGAAGAACAGTAAGAGGATAAACCATTACTCAGAAAATATTATGAATCATGAGAAAGACAATATTCTCTCATTCAATGACAATTCTCTTTATGAGAACCAGGAGGGAAATAGCAGCTGTAGTTTATCACTAAAATCAGAGAAGAGTACTGTTCAATCAAGACCACCGAAAGATTTTGTTTGCCCTATCACAGGCCAGATATTTAGTGATCCAGTTACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAGTGGCTCAGAACTGGAAATACAACATGTCCCATTACGCGGCAATCTATCTCGGCTAGCATGCTACCTAAAACAAACTATGTCTTGAAGAGATTGATAACTTCATGGAAAGAACAACATCCAGAACTAGTTCAGGAGTTCTCAAATTCTCCTTCTGTCAAAGATTTCCCAGTGGTCTCTAGTATGCAGAAAAAAGCCGACTCACCAGCTCATAAGAGTGCAAATGATTATATTAGACAAAGGAGCAAAAGATTAATGCAGGTCCCTGTAGCATCATCACCAACAAGTGTGATATCTCAAGCTGAAGTTGAAACAATTATAAATTGTTTGAAACCTTATATTTCAAGTCTCTGCACATCAGAAGACTTGCAAGAATGTGAGGATTCTGTGCTGGCGATTGCTAGATTATGGAAGGACTCAAAGAATGATCCTCATATTCATTCTCATTTATCAAATCCAACTTTTATAAATGGTTTAGTGGAAATACTTTCAGCTGCTCTAAATAGAGAAGTTCTGAGAACATCAATTTATATCCTGTCTGAGTTAATTTTTGCAGATGAAAGTGTTGGAGAAATACTCTCCAATGTTGATTCTGATTTCGACTGCTTGGCTACTCTGCTTAAGAATGGTTTGATTGAGGCTGCTGTTCTAATTTACCAACTGAGGCCAGTTTATGATCAACTCTCAGCTCATGAACTAATACCCTCCATTGTCCAGCTGATCCAGAACAAAAATGAGGAGTTTGATGATCTTCAGTTCCTTATTCATCCCAAAGATGCAGCTTTGGCGATTCTTGAGCAGATTTTATTAGGTGGGGATGAATACAGCAGGTCCCTCAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCAATCTTGGTTAAGTATATGGAAAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATTCTTCTGTGCTGTATGCAAGCTGAAAAAAGTTGCAGGAGCTTAATTGCCAACAGAATTGAATTATCTCCTGTTCTTGAATTATTTCATTCTGGAAATGACAGTGTCAGAGGAATATGTGTGGAGTTTCTCTCTCAGCTTGTTCAATTGCATAGGAGGACAATGTGCAACAAGTTATTGCAAATTATCAAGGATGAGGGAGCATTTAGTACAATGCATACATTTATTGTGTATCTTCAGATGGCTCCTATGGAGCATCAACTTGCAGTTGCTAGTCTTCTGCTTCAGCTTGATCTCCTGGTTGAGCCACGAAAGATGAGCATTTTCAGGGAAGAAGCTGTAGAGGCCCTGATAGAATCACTTTGGCGAAAGGACTTCTCGAACACTCAGACGAAGGCTTTAGATGCTTTACTGCTTCTTATTGGGCATCTCACTTCTTCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGATTGCAGGGTTTGACCAACCTTACAATGCTCTAATGAAAGTTGAGCAGTTGGAAAAACATGACAATGATTTGGAGGATGAAGAAAATGCTATGAGCTCTTGGCAAAAAAGGGTGGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCTTTAGAAGAATGTCTCAAGAGTACTTCCCTAGAGACAGCAAAATCATGCCTTGTCGTCGCCACGTGGCTCACGCACATGCTCTCAACCATTCCTGATACGGGTATTAGGGATGTTGCTAGAACATTCTTGCTTGAGGAACTTATACACGTCCTCCAATCATCCAAGAACCTTGAGGAAACGATCCTAGCTACCCTTGCTTTGAAGAATTTTATCAGTGATCCAATTGCTCTTGAAGCACTAGGAACTTATGCCAAAAGCATCTATAAAACACTGAGAAAGTTGAAGAAATATCGTGTGGTGTCTGCTGATATTATAAAAGCCTTACTGAACTTAAAATCCGTTGATGTGACATCATTGTGGAGTTGTAAGGAAGTCGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTACTTTCTTTGCTTTATGTGAATGGCCGGGTCTTGAGTGGACACTCTGATGGAACCATGAAGGTGTGGGATGCCGAGAAAAGAGTATTAAGATTGGTTCAAGAAACTCATGAACACAATAAAGCTGTAACATGTCTCTACTCCTCAGGCGATAAACTGTACAGTGGCTCCTTAGACAAAACCATCCGGGTATGGACGATGAAATGTGACAAGATTCACTGTGTTCAAGTTCACGATATCAAAGAGCCTGTGTATGAGTTGATAGCAAATGATAAATTGGCATGCTATGTAACTCAAGTTACTGGAGCAAAGGTGTATAATTGGTCGGAGGCTCCAAAGATTATTAATTTCAACAAACATGTGAAGTGCCTTGCAATGTCTGGGAACAAACTATATTGTGGTTGCTCTGGTTACATTGTTCAGGAGGTAGACTTGTCAAATTATACATCAAACACAATTTTATCCGGGACAAGAAAATTGCTGGGAAAACAATTCATTCACTCCCTTCTAATTTATGATGATTTTCTTATCGCTGGTGGTTCTTTAGTTGATTCGACCGCAGGAAAGATATTGTCTTTGTCGTCCAAAGAAGTGGTGGGTTCACTCTCAACAGGCCTAGATATCCACCGTATGGCCATGAACAGTGATTTTGTGTTTACAGGAACTAAATGTGGGACTATTGAGGTATGGCTAAAATATAAGCTAAGCAGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATCACGTCACTAGCTTCGGATTCTGATGGTGTGATGCTTTTTGTTGGTTCCTCTGACGGCAAAATCCAGGCCTGGGCTTTGGATTAG 4404 0.4015 MNQKDIVTFLTTTIDSFIQDRLIDKERRIQHKEQCAERLAAEDESIDKESEVRYSDQAVLANLDWGIEALEEAINTYNMETKIARLDYAEKMLQVCAMLNPDRKTAGVPNFYLSAWAHLNLSYLWKLRNNVQNSIFHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSTDLSFTADFDQFFNESLICAMRPHQVEKLQNLEKLYGESLDKNTTLYAKYYKDCFNPDSTTSSKKAPMLPIAEPPMTPLHELSCSIPDYVKFGPILPKSAGFSPALKAKDGANETIRGNVTSSHSQKADKSSSSWGAKEKTIGEYEDSDDDLDDPYIDRDRKTQTTLSPRIKGQDIEPKVHQLNQKNQIYSPPVFSPSDSPRATPETSSSLRAIHTKGEPKCLRLLSRRFSDTSIFNSSPISPHLSTDHSISSEDSDNEIMGVKNSKRINHYSENIMNHEKDNILSFNDNSLYENQEGNSSCSLSLKSEKSTVQSRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLRTGNTTCPITRQSISASMLPKTNYVLKRLITSWKEQHPELVQEFSNSPSVKDFPVVSSMQKKADSPAHKSANDYIRQRSKRLMQVPVASSPTSVISQAEVETIINCLKPYISSLCTSEDLQECEDSVLAIARLWKDSKNDPHIHSHLSNPTFINGLVEILSAALNREVLRTSIYILSELIFADESVGEILSNVDSDFDCLATLLKNGLIEAAVLIYQLRPVYDQLSAHELIPSIVQLIQNKNEEFDDLQFLIHPKDAALAILEQILLGGDEYSRSLNALSVISANGIPILVKYMERMEGRRSVVSILLCCMQAEKSCRSLIANRIELSPVLELFHSGNDSVRGICVEFLSQLVQLHRRTMCNKLLQIIKDEGAFSTMHTFIVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIFREEAVEALIESLWRKDFSNTQTKALDALLLLIGHLTSSGKSYTEAWLLKIAGFDQPYNALMKVEQLEKHDNDLEDEENAMSSWQKRVAFVLCNHEKGSIFKALEECLKSTSLETAKSCLVVATWLTHMLSTIPDTGIRDVARTFLLEELIHVLQSSKNLEETILATLALKNFISDPIALEALGTYAKSIYKTLRKLKKYRVVSADIIKALLNLKSVDVTSLWSCKEVVELDLSSNGEVLSLLYVNGRVLSGHSDGTMKVWDAEKRVLRLVQETHEHNKAVTCLYSSGDKLYSGSLDKTIRVWTMKCDKIHCVQVHDIKEPVYELIANDKLACYVTQVTGAKVYNWSEAPKIINFNKHVKCLAMSGNKLYCGCSGYIVQEVDLSNYTSNTILSGTRKLLGKQFIHSLLIYDDFLIAGGSLVDSTAGKILSLSSKEVVGSLSTGLDIHRMAMNSDFVFTGTKCGTIEVWLKYKLSRVASIKMAGGHTKITSLASDSDGVMLFVGSSDGKIQAWALD 1467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01461 1467 ProSiteProfiles U-box domain profile. 504 579 IPR003613 GO:0004842|GO:0016567
Accr4g01461 1467 MobiDBLite consensus disorder prediction 304 326 - -
Accr4g01461 1467 ProSiteProfiles Trp-Asp (WD) repeats profile. 1433 1467 IPR001680 GO:0005515
Accr4g01461 1467 Gene3D - 646 921 IPR011989 -
Accr4g01461 1467 SUPERFAMILY ARM repeat 611 1128 IPR016024 -
Accr4g01461 1467 Coils Coil 1019 1039 - -
Accr4g01461 1467 CDD RING-Ubox_PUB 506 558 IPR045210 -
Accr4g01461 1467 MobiDBLite consensus disorder prediction 304 399 - -
Accr4g01461 1467 MobiDBLite consensus disorder prediction 368 399 - -
Accr4g01461 1467 Pfam U-box domain 506 576 IPR003613 GO:0004842|GO:0016567
Accr4g01461 1467 SMART WD40_4 1219 1256 IPR001680 GO:0005515
Accr4g01461 1467 SMART WD40_4 1385 1421 IPR001680 GO:0005515
Accr4g01461 1467 SMART WD40_4 1176 1214 IPR001680 GO:0005515
Accr4g01461 1467 SMART WD40_4 1424 1465 IPR001680 GO:0005515
Accr4g01461 1467 SMART Ubox_2 508 572 IPR003613 GO:0004842|GO:0016567
Accr4g01461 1467 ProSiteProfiles Trp-Asp (WD) repeats profile. 1226 1258 IPR001680 GO:0005515
Accr4g01461 1467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 586 IPR013083 -
Accr4g01461 1467 Gene3D - 1156 1467 IPR015943 GO:0005515
Accr4g01461 1467 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1466 - -
Accr4g01461 1467 SUPERFAMILY WD40 repeat-like 1198 1466 IPR036322 GO:0005515
Accr4g01461 1467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1433 1467 - -
Accr4g01461 1467 Pfam WD domain, G-beta repeat 1435 1464 IPR001680 GO:0005515
Accr4g01461 1467 Pfam WD domain, G-beta repeat 1225 1255 IPR001680 GO:0005515
Accr4g01461 1467 SUPERFAMILY RING/U-box 494 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01461 Accr-Chr4 14755768 14762294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01461 487 891 U-box Gene Family AT1G23030 25.899 1.93e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01461 - - gmx:100776142 2152.1