Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01460 ATGAACCAAAAGGACATCGTTACATTCTTGACGACAACTATAGATAGTTTCATTCAAGATCGGTTAATCGACAAAGAAAGAAGGATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCTGCAGAAGATGAAAGCATCGATAAAGAAAGTGAGGTTCGGTACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATAGAAGCCCTTGAAGAAGCTATTAATACCTATAACATGGAAACTAAGATTGCTCGATTAGATTATGCTGAGAAGATGTTACAAGTATGTGCCATGTTAAATCCCGATCGGAAAACCGCCGGAGTTCCAAATTTCTACCTCTCAGCTTGGGCCCACCTTAACCTCTCTTATCTATGGAAGTTGAGGAACAATGTTCAAAACTCAATTTTTCACGCTCTAGAGATGTTCATCGTTGACCCTTTTTTCTCAAGGATTGACTTTGCACCAGAGCTTTGGAAAGATCTGTTTCTTCCACATATGAGTTCCATTGTAGGTTGGTATTCAGAGGAGAGGCATAGGCTCATGATGGAAGTTATACCTGACTCTACAGATTTGTCTTTTACAGCTGATTTTGATCAGTTCTTCAATGAGTCTTTGATATGTGCTATGAGGCCACATCAAGTAGAGAAACTGCAGAATCTGGAGAAGCTATATGGAGAGTCATTGGACAAGAACACAACACTATATGCAAAGTATTATAAGGATTGCTTTAATCCTGATTCAACAACATCCAGCAAGAAGGCTCCTATGTTACCGATCGCCGAGCCACCGATGACACCTTTGCATGAGTTGAGCTGCTCCATTCCTGATTATGTTAAATTCGGTCCTATATTGCCTAAAAGTGCAGGGTTTTCTCCTGCTCTAAAAGCTAAAGATGGTGCAAACGAAACTATCAGAGGGAATGTGACTTCCAGCCATTCACAGAAGGCAGACAAGTCATCCTCTTCATGGGGTGCTAAGGAGAAAACCATTGGAGAGTATGAAGATTCAGATGATGACCTTGATGATCCATACATTGATCGAGATAGAAAAACTCAAACTACTTTGTCTCCTAGAATTAAGGGTCAGGATATTGAGCCAAAAGTACATCAACTGAACCAGAAGAATCAAATATATTCTCCTCCTGTTTTCTCTCCTTCGGATTCTCCAAGAGCAACTCCTGAAACTTCATCTTCACTTCGTGCCATACACACTAAAGGAGAACCCAAATGTCTGCGCTTATTATCTAGGCGTTTTTCAGACACAAGTATTTTCAACTCTTCACCAATATCTCCACACCTGAGTACTGATCACAGCATCAGCTCAGAAGATTCTGATAACGAAATAATGGGCGTGAAGAACAGTAAGAGGATAAACCATTACTCAGAAAATATTATGAATCATGAGAAAGACAATATTCTCTCATTCAATGACAATTCTCTTTATGAGAACCAGGAGGGAAATAGCAGCTGTAGTTTATCACTAAAATCAGAGAAGAGTACTGTTCAATCAAGACCACCGAAAGATTTTGTTTGCCCTATCACAGGCCAGATATTTAGTGATCCAGTTACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAGTGGCTCAGAACTGGAAATACAACATGTCCCATTACGCGGCAATCTATCTCGGCTAGCATGCTACCTAAAACAAACTATGTCTTGAAGAGATTGATAACTTCATGGAAAGAACAACATCCAGAACTAGTTCAGGAGTTCTCAAATTCTCCTTCTGTCAAAGATTTCCCAGTGGTCTCTAGTATGCAGAAAAAAGCCGACTCACCAGCTCATAAGAGTGCAAATGATTATATTAGACAAAGGAGCAAAAGATTAATGCAGGTCCCTGTAGCATCATCACCAACAAGTGTGATATCTCAAGCTGAAGTTGAAACAATTATAAATTGTTTGAAACCTTATATTTCAAGTCTCTGCACATCAGAAGACTTGCAAGAATGTGAGGATTCTGTGCTGGCGATTGCTAGATTATGGAAGGACTCAAAGAATGATCCTCATATTCATTCTCATTTATCAAATCCAACTTTTATAAATGGTTTAGTGGAAATACTTTCAGCTGCTCTAAATAGAGAAGTTCTGAGAACATCAATTTATATCCTGTCTGAGTTAATTTTTGCAGATGAAAGTGTTGGAGAAATACTCTCCAATGTTGATTCTGATTTCGACTGCTTGGCTACTCTGCTTAAGAATGGTTTGATTGAGGCTGCTGTTCTAATTTACCAACTGAGGCCAGTTTATGATCAACTCTCAGCTCATGAACTAATACCCTCCATTGTCCAGCTGATCCAGAACAAAAATGAGGAGTTTGATGATCTTCAGTTCCTTATTCATCCCAAAGATGCAGCTTTGGCGATTCTTGAGCAGATTTTATTAGGTGGGGATGAATACAGCAGGTCCCTCAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCAATCTTGGTTAAGTATATGGAAAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATTCTTCTGTGCTGTATGCAAGCTGAAAAAAGTTGCAGGAGCTTAATTGCCAACAGAATTGAATTATCTCCTGTTCTTGAATTATTTCATTCTGGAAATGACAGTGTCAGAGGAATATGTGTGGAGTTTCTCTCTCAGCTTGTTCAATTGCATAGGAGGACAATGTGCAACAAGTTATTGCAAATTATCAAGGATGAGGGAGCATTTAGTACAATGCATACATTTATTGTGTATCTTCAGATGGCTCCTATGGAGCATCAACTTGCAGTTGCTAGTCTTCTGCTTCAGCTTGATCTCCTGGTTGAGCCACGAAAGATGAGCATTTTCAGGGAAGAAGCTGTAGAGGCCCTGATAGAATCACTTTGGCGAAAGGACTTCTCGAACACTCAGACGAAGGCTTTAGATGCTTTACTGCTTCTTATTGGGCATCTCACTTCTTCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGATTGCAGGGTTTGACCAACCTTACAATGCTCTAATGAAAGTTGAGCAGTTGGAAAAACATGACAATGATTTGGTAGAAACAACGGAGGATGAAGAAAATGCTATGAGCTCTTGGCAAAAAAGGGTGGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCTTTAGAAGAATGTCTCAAGAGTACTTCCCTAGAGACAGCAAAATCATGCCTTGTCGTCGCCACGTGGCTCACGCACATGCTCTCAACCATTCCTGATACGGGTATTAGGGATGTTGCTAGAACATTCTTGCTTGAGGAACTTATACACGTCCTCCAATCATCCAAGAACCTTGAGGAAACGATCCTAGCTACCCTTGCTTTGAAGAATTTTATCAGTGATCCAATTGCTCTTGAAGCACTAGGAACTTATGCCAAAAGCATCTATAAAACACTGAGAAAGTTGAAGAAATATCGTGTGGTGTCTGCTGATATTATAAAAGCCTTACTGAACTTAAAATCCGTTGATGTGACATCATTGTGGAGTTGTAAGGAAGTCGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTACTTTCTTTGCTTTATGTGAATGGCCGGGTCTTGAGTGGACACTCTGATGGAACCATGAAGGTGTGGGATGCCGAGAAAAGAGTATTAAGATTGGTTCAAGAAACTCATGAACACAATAAAGCTGTAACATGTCTCTACTCCTCAGGCGATAAACTGTACAGTGGCTCCTTAGACAAAACCATCCGGGTATGGACGATGAAATGTGACAAGATTCACTGTGTTCAAGTTCACGATATCAAAGAGCCTGTGTATGAGTTGATAGCAAATGATAAATTGGCATGCTATGTAACTCAAGTTACTGGAGCAAAGGTGTATAATTGGTCGGAGGCTCCAAAGATTATTAATTTCAACAAACATGTGAAGTGCCTTGCAATGTCTGGGAACAAACTATATTGTGGTTGCTCTGGTTACATTGTTCAGGAGGTAGACTTGTCAAATTATACATCAAACACAATTTTATCCGGGACAAGAAAATTGCTGGGAAAACAATTCATTCACTCCCTTCTAATTTATGATGATTTTCTTATCGCTGGTGGTTCTTTAGTTGATTCGACCGCAGGAAAGATATTGTCTTTGTCGTCCAAAGAAGTGGTGGGTTCACTCTCAACAGGCCTAGATATCCACCGTATGGCCATGAACAGTGATTTTGTGTTTACAGGAACTAAATGTGGGACTATTGAGGTATGGCTAAAATATAAGCTAAGCAGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATCACGTCACTAGCTTCGGATTCTGATGGTGTGATGCTTTTTGTTGGTTCCTCTGACGGCAAAATCCAGGCCTGGGCTTTGGATTAG 4416 0.4015 MNQKDIVTFLTTTIDSFIQDRLIDKERRIQHKEQCAERLAAEDESIDKESEVRYSDQAVLANLDWGIEALEEAINTYNMETKIARLDYAEKMLQVCAMLNPDRKTAGVPNFYLSAWAHLNLSYLWKLRNNVQNSIFHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSTDLSFTADFDQFFNESLICAMRPHQVEKLQNLEKLYGESLDKNTTLYAKYYKDCFNPDSTTSSKKAPMLPIAEPPMTPLHELSCSIPDYVKFGPILPKSAGFSPALKAKDGANETIRGNVTSSHSQKADKSSSSWGAKEKTIGEYEDSDDDLDDPYIDRDRKTQTTLSPRIKGQDIEPKVHQLNQKNQIYSPPVFSPSDSPRATPETSSSLRAIHTKGEPKCLRLLSRRFSDTSIFNSSPISPHLSTDHSISSEDSDNEIMGVKNSKRINHYSENIMNHEKDNILSFNDNSLYENQEGNSSCSLSLKSEKSTVQSRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLRTGNTTCPITRQSISASMLPKTNYVLKRLITSWKEQHPELVQEFSNSPSVKDFPVVSSMQKKADSPAHKSANDYIRQRSKRLMQVPVASSPTSVISQAEVETIINCLKPYISSLCTSEDLQECEDSVLAIARLWKDSKNDPHIHSHLSNPTFINGLVEILSAALNREVLRTSIYILSELIFADESVGEILSNVDSDFDCLATLLKNGLIEAAVLIYQLRPVYDQLSAHELIPSIVQLIQNKNEEFDDLQFLIHPKDAALAILEQILLGGDEYSRSLNALSVISANGIPILVKYMERMEGRRSVVSILLCCMQAEKSCRSLIANRIELSPVLELFHSGNDSVRGICVEFLSQLVQLHRRTMCNKLLQIIKDEGAFSTMHTFIVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIFREEAVEALIESLWRKDFSNTQTKALDALLLLIGHLTSSGKSYTEAWLLKIAGFDQPYNALMKVEQLEKHDNDLVETTEDEENAMSSWQKRVAFVLCNHEKGSIFKALEECLKSTSLETAKSCLVVATWLTHMLSTIPDTGIRDVARTFLLEELIHVLQSSKNLEETILATLALKNFISDPIALEALGTYAKSIYKTLRKLKKYRVVSADIIKALLNLKSVDVTSLWSCKEVVELDLSSNGEVLSLLYVNGRVLSGHSDGTMKVWDAEKRVLRLVQETHEHNKAVTCLYSSGDKLYSGSLDKTIRVWTMKCDKIHCVQVHDIKEPVYELIANDKLACYVTQVTGAKVYNWSEAPKIINFNKHVKCLAMSGNKLYCGCSGYIVQEVDLSNYTSNTILSGTRKLLGKQFIHSLLIYDDFLIAGGSLVDSTAGKILSLSSKEVVGSLSTGLDIHRMAMNSDFVFTGTKCGTIEVWLKYKLSRVASIKMAGGHTKITSLASDSDGVMLFVGSSDGKIQAWALD 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01460 1471 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1470 - -
Accr4g01460 1471 ProSiteProfiles U-box domain profile. 504 579 IPR003613 GO:0004842|GO:0016567
Accr4g01460 1471 MobiDBLite consensus disorder prediction 304 326 - -
Accr4g01460 1471 Coils Coil 1470 1471 - -
Accr4g01460 1471 ProSiteProfiles Trp-Asp (WD) repeats profile. 1437 1471 IPR001680 GO:0005515
Accr4g01460 1471 CDD RING-Ubox_PUB 506 558 IPR045210 -
Accr4g01460 1471 MobiDBLite consensus disorder prediction 304 399 - -
Accr4g01460 1471 ProSiteProfiles Trp-Asp (WD) repeats profile. 1230 1262 IPR001680 GO:0005515
Accr4g01460 1471 SMART WD40_4 1180 1218 IPR001680 GO:0005515
Accr4g01460 1471 SMART WD40_4 1389 1425 IPR001680 GO:0005515
Accr4g01460 1471 SMART WD40_4 1428 1469 IPR001680 GO:0005515
Accr4g01460 1471 SMART WD40_4 1223 1260 IPR001680 GO:0005515
Accr4g01460 1471 MobiDBLite consensus disorder prediction 368 399 - -
Accr4g01460 1471 Gene3D - 1285 1471 IPR015943 GO:0005515
Accr4g01460 1471 Gene3D - 628 914 IPR011989 -
Accr4g01460 1471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1437 1471 - -
Accr4g01460 1471 SMART Ubox_2 508 572 IPR003613 GO:0004842|GO:0016567
Accr4g01460 1471 Gene3D - 915 1182 IPR011989 -
Accr4g01460 1471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 586 IPR013083 -
Accr4g01460 1471 Gene3D - 1183 1281 IPR015943 GO:0005515
Accr4g01460 1471 Pfam U-box domain 506 576 IPR003613 GO:0004842|GO:0016567
Accr4g01460 1471 Pfam WD domain, G-beta repeat 1229 1259 IPR001680 GO:0005515
Accr4g01460 1471 Pfam WD domain, G-beta repeat 1439 1468 IPR001680 GO:0005515
Accr4g01460 1471 SUPERFAMILY WD40 repeat-like 1202 1470 IPR036322 GO:0005515
Accr4g01460 1471 SUPERFAMILY ARM repeat 758 1084 IPR016024 -
Accr4g01460 1471 SUPERFAMILY RING/U-box 494 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01460 Accr-Chr4 14755768 14762294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01460 487 891 U-box Gene Family AT1G23030 25.899 1.87e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01460 - - gmx:100776142 2160.19