Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01427 ATGATCGATTCCGTTCTTCTGGCACTCTTCTTGCCCTGCCTCGGCATGAGCGCGATCTTCATAGTCTACATGTGTCTTCTCTGGTACGCCACTACCCACCGTCCTCAAATCGCGATGCCGTCGAAGCCCGCGCGGGAGAAGGGCTTGTCGGCGTCGGAGCTGGAGAAGATGCCCAAAGTCACCGGGAAGGAACTGGTGATGGGGAGTGAATGCGCTGTTTGTCTCGACGAGATCGAAAACGAACAACTGGCTCGACTGGTTCCCGGCTGCAACCACGGGTTCCATGTGGAATGCGCTGATGCCTGGCTTTCCAAGCACCCTCTGTGCCCTGTCTGTAGAGCCAAGCTGGATCCTCAGATTCTCAAGCCCTGTGAGAATCCCTGTTAA 387 0.5633 MIDSVLLALFLPCLGMSAIFIVYMCLLWYATTHRPQIAMPSKPAREKGLSASELEKMPKVTGKELVMGSECAVCLDEIENEQLARLVPGCNHGFHVECADAWLSKHPLCPVCRAKLDPQILKPCENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01427 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 119 IPR013083 -
Accr4g01427 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Accr4g01427 128 SUPERFAMILY RING/U-box 55 119 - -
Accr4g01427 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 122 - -
Accr4g01427 128 SMART ring_2 71 112 IPR001841 -
Accr4g01427 128 Pfam Ring finger domain 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01427 Accr-Chr4 14368545 14368931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01427 1 128 C3H Transcription Factor Family AT5G42200 54.412 1.21e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01427 K19037 - gmx:100811160 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01427 4 14368545 14368931 Accr4g01427 4 14368545 14368931 ECH