Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01402 ATGAAAGGCGACAAATCGAAGGCGGAATCTAAGAAAGCTGATACCAGGCTTGCTGTGAATAGGAAGGGTGCTGCCGCCTCCAAGGCAGTCGGGAAACCAATCAAGGGAAAGGCGGCGAAAGACCCTAACAAACCAAAGAGACCGGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTCAACAAGGAAAATCCTAACAACAAAGCAGTGTCTGCTGTTGGCAAAGCTGCTGGGGCTAAATGGAAGTCCATGTCTGATGCTGAGAAAGCACCCTATGTGGCTAAAGCAGAGAAACGTAAGGCTGAGTATGAGAAGAATATGAAAGCCTATAATAAGAAACAGGCGGAAGGTCCCAATGCCGCAGATGATGAAGAATCTGATAAGTCAATGTCTGAGGTTAATGATGCGGACGGAGGACATGAAGATGGCAGTGATGAGGAGGAAGATGACGAGTAG 465 0.4753 MKGDKSKAESKKADTRLAVNRKGAAASKAVGKPIKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPNNKAVSAVGKAAGAKWKSMSDAEKAPYVAKAEKRKAEYEKNMKAYNKKQAEGPNAADDEESDKSMSEVNDADGGHEDGSDEEEDDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01402 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Accr4g01402 154 SMART hmgende2 44 115 IPR009071 -
Accr4g01402 154 MobiDBLite consensus disorder prediction 1 47 - -
Accr4g01402 154 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Accr4g01402 154 CDD HMG-box_AtHMGB1-like 46 106 - -
Accr4g01402 154 Coils Coil 96 116 - -
Accr4g01402 154 MobiDBLite consensus disorder prediction 1 18 - -
Accr4g01402 154 MobiDBLite consensus disorder prediction 94 141 - -
Accr4g01402 154 Gene3D High mobility group box domain 29 136 IPR036910 -
Accr4g01402 154 SUPERFAMILY HMG-box 32 120 IPR036910 -
Accr4g01402 154 MobiDBLite consensus disorder prediction 79 154 - -
Accr4g01402 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 151 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01402 Accr-Chr4 14089056 14090340 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Accr4g01402 HMG_box 6.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01402 K25507 - qsa:O6P43_018776 214.927