Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01398 ATGAGTTTGATCTGGGCTGTTTCTTGTTGCGTCCTCGTGCTTTTGTCAGTACCTCCATATGTGATAAGTGGTAATTCGTCGAGACCGGCCGTCGTGCATATCGGTGCTCTCTTCACCTTTGATTCTACCATTGGGAGAGTCGCTAAAATCGCGTTGGAGGAAGCGGTGAAGGATGTCAACGCCAATGCTAGCGTGCTCCGTGGAACTAAACTTGTTCTCACTCAGCAAAATTCCAATTGCAGTGGTTTCTTGGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTGGCAATCATAGGCCCGCAATCTTCCGTTGTTGCTCACATAATATCTCATGTGGCAAATGAACTTCAAGTCCCTCTGTTGTCATTTGCAGCGACGGACCCAACCCTAACCAACCTACAGTTCCCTTTTTTTGTGAGAACAACGATGAGTGATTTGTACCAAATGGCTGCAGTTGCTGAAATTATTGACTATTATGGTTGGAAGGACGTCATTGCTATTTTTATAGATGATGATTTTGGACGAAATGGCGTGTCGGCCTTGGATGATCAACTATCAGCTAGGCGCTGTAGAATTTCTTACAAGGCAGGAATTAGATCAGGAACTAGAGCTAACCGGGATGAAATCACGGATTTGCTGGTGAAGGTGGCTCTACTGCAATCTCGGGTCATTGTTCTCCATGTAAATCCTGATTTAGGATTTATGGTTTTCAATGTTGCGCAATATCTTGGGATGACAGGGAATGGCTACGTCTGGATAGCCACAGATTGGCTCTCCTCTGTTGTGGATTCTACTTCTCTCCCTTCAGATACGATGAGTGTTCTTCAGGGCGTTCTTGTTTTACGCCAACATACTCCTGATTCAGATAGAAAAAAAGCATTTCTGTCTAGGTGGAACAAGTTGACTGCAGGCTCTGTGGGGTTACATTCTTATGGCCTTCATACATATGACACTGTTTGGCTGCTTGCACATGCTATTGATGCATTCTTCAACCAGGGTGGCATTATATCATTTTCTAACGACTCTAGGATACATGATGCTGACAAAGGTAGTCTTAACCTTGAGGCAATGAGCATATTTGACAACGGAACGCTTCTGTTGAACAACATATTGCAGAGCAACTTTGTTGGTTTAACAGGTCCCGTAAAATTTGAGCCAGATAGATCTCTTGTTCGTCCTGCATATGACATTATCAATGTGGTGGGAACCGGGATTCGTCGGGTTGGTTACTGGTCCAACTATTCTGGTCTTTCCATTGTACCTCCCGAGACATTGTATGCTAAGCCTCCTAATCGCTCCATTGCAAACCAACATCTTCATTCTGTAATATGGCCTGGGGAAACACTATCAAAGCCCCGTGGATGGGTTTTTCCGAATAATGGAAAAAAATTGAGAATTGGTGTGCCTATCCGGTTCAGTTACCGTCAATTTGTATCACCCATTAAAGGAACTGATCTTTTCAAAGGTTACTGCATTGATGTATTCACGGCGGCTGTAAACTTGTTACCGTATGCTGTTCCATACAGCTTTGTTCCATTTGGAGATGGCCGTGAGAACCCAAACTACGATGAACTTGTCAGGTTGATCACCACAGGGTACTTTGATGGTGCTGTTGGTGACATTGCCATCGTCACAAACCGGACAAAGGTTGTAGATTTTACCCAGCCATATACTGAATCTGGACTTGTTGTGGTTGCACCTTTTAAGAAAACAAACTCTGGTGGATGGTCATTTCTGCGGCCATTTACTCCTTTAATGTGGATTGTCACTGCTTGCTTCTTCTTTTTCATTGGAATGGTTGTATGGATTCTGGAGCACAGAATAAATGACGAGTTCAGGGGTCCACCTAGAAAGCAAATTATAACCATTTTATGGTTTAGCTTGTCAACTCTATTCTTTGCCCACAGAGAGAATACTATGAGTACTCTTGGTCGCACGGTGCTACTCATATGGCTGTTTGTGGTTTTGATAATCAATTCCAGCTACACAGCAAGTTTGACATCAATCCTCACAGTGCAGCAACTCTCTTCTAATATCAATGGAATAGACAGCTTAAAAGCTGGTAATGAACCCATAGGGTATCAAGTGGGTTCATTCGCAAAACATTATTTGGTTGACGATATTGGAATATCCAAATCCAGGCTTGTTGCCCTTGGATCGCCTGAAGAATATGCCAAGGCTCTCCAGCTCGGTCCTGACAATGGAGGTGTCGCTGCTATTGTTGACGAACGATCCTATGTTGAAATTTTCTTGTCAACCAATTGCAGCTTCAGGATAGTAGGTCCGGAGTTCACCAGAAGTGGCTGGGGATTTGCATTCCCACGGGACTCTCCTCTGGCCATTGACTTGTCCACTGCAATTCTTCAGCTTTCTGAAAATGGTGAACTGCAGCGGATTTATGATAAGTGGCTCGTAGGAAGATCCTGTAGTGCGGATGATACTGAAATAGATTCGAATCGGCTTCAGTTTAAAAGCTTCTGGGGTCTCTTTCTTCTTCTTCCAATGGAAGCCCATCTGGACATCTTCGAAGATTTATTTCGCTGA 2553 0.4395 MSLIWAVSCCVLVLLSVPPYVISGNSSRPAVVHIGALFTFDSTIGRVAKIALEEAVKDVNANASVLRGTKLVLTQQNSNCSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELQVPLLSFAATDPTLTNLQFPFFVRTTMSDLYQMAAVAEIIDYYGWKDVIAIFIDDDFGRNGVSALDDQLSARRCRISYKAGIRSGTRANRDEITDLLVKVALLQSRVIVLHVNPDLGFMVFNVAQYLGMTGNGYVWIATDWLSSVVDSTSLPSDTMSVLQGVLVLRQHTPDSDRKKAFLSRWNKLTAGSVGLHSYGLHTYDTVWLLAHAIDAFFNQGGIISFSNDSRIHDADKGSLNLEAMSIFDNGTLLLNNILQSNFVGLTGPVKFEPDRSLVRPAYDIINVVGTGIRRVGYWSNYSGLSIVPPETLYAKPPNRSIANQHLHSVIWPGETLSKPRGWVFPNNGKKLRIGVPIRFSYRQFVSPIKGTDLFKGYCIDVFTAAVNLLPYAVPYSFVPFGDGRENPNYDELVRLITTGYFDGAVGDIAIVTNRTKVVDFTQPYTESGLVVVAPFKKTNSGGWSFLRPFTPLMWIVTACFFFFIGMVVWILEHRINDEFRGPPRKQIITILWFSLSTLFFAHRENTMSTLGRTVLLIWLFVVLIINSSYTASLTSILTVQQLSSNINGIDSLKAGNEPIGYQVGSFAKHYLVDDIGISKSRLVALGSPEEYAKALQLGPDNGGVAAIVDERSYVEIFLSTNCSFRIVGPEFTRSGWGFAFPRDSPLAIDLSTAILQLSENGELQRIYDKWLVGRSCSADDTEIDSNRLQFKSFWGLFLLLPMEAHLDIFEDLFR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01398 850 SUPERFAMILY Periplasmic binding protein-like II 443 807 - -
Accr4g01398 850 Gene3D - 147 420 - -
Accr4g01398 850 Gene3D - 577 705 - -
Accr4g01398 850 Pfam Receptor family ligand binding region 50 405 IPR001828 -
Accr4g01398 850 CDD PBP1_GABAb_receptor_plant 33 424 IPR044440 -
Accr4g01398 850 FunFam Glutamate receptor 578 708 - -
Accr4g01398 850 Gene3D - 749 814 - -
Accr4g01398 850 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 836 IPR015683 -
Accr4g01398 850 Pfam Bacterial extracellular solute-binding proteins, family 3 490 807 IPR001638 -
Accr4g01398 850 Gene3D - 462 576 - -
Accr4g01398 850 FunFam Glutamate receptor 704 811 - -
Accr4g01398 850 Pfam Ligand-gated ion channel 808 836 IPR001320 GO:0015276|GO:0016020
Accr4g01398 850 SUPERFAMILY Periplasmic binding protein-like I 26 458 IPR028082 -
Accr4g01398 850 Gene3D - 50 395 - -
Accr4g01398 850 PIRSF IGluLR_plant 2 845 IPR017103 -
Accr4g01398 850 PRINTS Metabotropic glutamate GPCR signature 132 151 IPR000337 GO:0004930|GO:0007186|GO:0016020
Accr4g01398 850 PRINTS Metabotropic glutamate GPCR signature 151 167 IPR000337 GO:0004930|GO:0007186|GO:0016020
Accr4g01398 850 PRINTS Metabotropic glutamate GPCR signature 167 184 IPR000337 GO:0004930|GO:0007186|GO:0016020
Accr4g01398 850 PRINTS Metabotropic glutamate GPCR signature 100 126 IPR000337 GO:0004930|GO:0007186|GO:0016020
Accr4g01398 850 FunFam Glutamate receptor 462 577 - -
Accr4g01398 850 SMART GluR_14 468 809 IPR001320 GO:0015276|GO:0016020
Accr4g01398 850 FunFam Glutamate receptor 147 306 - -
Accr4g01398 850 CDD GluR_Plant 465 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01398 Accr-Chr4 14017963 14021708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01398 25 845 Ion Channels AT1G42540 66.788 0.0 1177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01398 K05387 - gmx:102661260 1332.01