Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01358 ATGACTAGAAAGAAGGTGAAGCTGGCGTTCATAGCGAACGACTCTGCGAGAAAAGCCACATACAAGAAAAGAAAGAAGGGTCTGATCAAGAAAATCGACGAACTCACCACTCTCTGTGGAATCGAGGCCTGTGCGATCGTCTACAGTCCGTACGACTCTCAACCGGAGGTTTGGCCGTCGCCGTTTGGGGCCCAGCGTGTGCTGTCGAAGTTCAGGAGGATGCCGGAGCTGGAACAGAGCAAGAAAATGGTGAACCAGGAAGGGTTTCTGAAACAGAGAATTCTGAAAGCGAAGGAGCAGTTGAAAAAACAGAGGAAGGACAACAGGGAAAAGGAGATGACTCAGGTGATGTATCAGTATCTCAGTGCAGGGAAGGTTCTTCACAACATGACGATGATTGATCTCAACGATCTGGCTTGGCTCGTCGAGCAGAATCTGAAGGACGTTAACCGCAGGATCGAGGCGTTGGATAAGAGGGCTCAGAGTCAGAGGGCGGCTGATGTGGCAGCAATGGCGGCCGCTGACGTGGTGGCAAGGGGCCGAGATAAGGCGAAGGCAGAGCAGGCAGATGGGATGGAGGCGACTGCCGGCGGGGATGGGATGCCGAAGCAGCAGTGGTATACGGAGATGATGAATGGTGGTGCTGATGAAACGATACCGTTTGCAGATGTCAGTCATTCCAATGCGTTTTGGCATAATAACTATTTCCCTTGA 714 0.5196 MTRKKVKLAFIANDSARKATYKKRKKGLIKKIDELTTLCGIEACAIVYSPYDSQPEVWPSPFGAQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQLKKQRKDNREKEMTQVMYQYLSAGKVLHNMTMIDLNDLAWLVEQNLKDVNRRIEALDKRAQSQRAADVAAMAAADVVARGRDKAKAEQADGMEATAGGDGMPKQQWYTEMMNGGADETIPFADVSHSNAFWHNNYFP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01358 237 MobiDBLite consensus disorder prediction 184 204 - -
Accr4g01358 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr4g01358 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr4g01358 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr4g01358 237 PANTHER MADS BOX PROTEIN 3 148 - -
Accr4g01358 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Accr4g01358 237 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Accr4g01358 237 Coils Coil 91 114 - -
Accr4g01358 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Accr4g01358 237 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Accr4g01358 237 Coils Coil 146 166 - -
Accr4g01358 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Accr4g01358 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr4g01358 237 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01358 Accr-Chr4 13343559 13344272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01358 1 175 Type I MADS-box Gene Family AT5G48670 61.714 1.10e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr4g01358 SRF-TF 6.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01358 - - pcin:129317170 328.946