Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01357 ATGGTTTTATCTTGGTCCAGAAGAAGAGTTTTTCGCTATGCCCGCAAAGGAAAAGACCTTCCCGGCGGAGCCGCCAACGCCAACGACGGAGAGTTGGACGTCGCCGATGTCGTTGTTCCCACCCACTTTCGGTGCCCGATCACTCTGGACTTGATGTCAGATCCGGTGACTTTATCCACCGGAATCACCTACGACAGGGACAGCATCGAGAAGTGGATAGAATCTGGAAACAGAACGTGCCCAGTCACCAATCAGCCTTTGACTACCTTCGACATGATCCCCAACCACGCCATTCGAAAAATGATCCAAGAATGGTGCGTCCAACATCGTTCCTTTGGCTTCGAGAGAATCCCCACCCCGAGAATCCCGGTGACGCAGTACGAGGTTTCAGAGATCTGTACCAAAATAATATCGGCAACGCAGCGTGGTGACTACAACAAGTGCCAACAGTTGGTCGGTAAAATCAAGATTTGGGGCAAAGAGAGTGAAAGAAACAAAAAGTGTATCGCTGAAAACGAGGATGCTGCCACTACACTAGCTAACGCCTTCAGTTCTTTCTCAAACGCTTCAATTGAGAAAAACTTAGGCCTTCTAGAGAACATTCTTGGGATTCTAACATGGATTTTCCCCAAGGTACAACAAGGGTATACTCAAATTCAAACACAGTCAATGTTGAGTTCTGAAGCGTCATTACGTTGCATGGTTTGGTTCCTCAACAGCAAAGACCTATCATCAAGGCAAAACGCAGCGTTGGTTTTGAAGCAAGTACCTACAGAGCCATTAGCGAAAACCGAAGGTGTGCTTGAAGCTTTAGTGAAGATGATTAAAGAACCTGTAGGTCCTTCTGCGACAAAAGCAAGCCTGAAGGCAATTTTCCAGATGGTTTCTTCATCAAATATTGAGAAAGAGGGGATCATCAAAAGATGTGTTGAACTAGGCCTTGTTACGTCGTTGCTTGAAGCACTAGTGGACGGCGATAGAGGGATATGTGAGAAGGCTTTGGGAGTGTTGGATTGTTTATGTGATTATAACCAAGGGAAGGAAGTGGCTAAGGCTAATGTGTTGACTTTGCCTCTTGTGGTGAAGAAGATATTGAGGGTTTCTGGGTTGGCTTCTGACTTTGGAGTCTCTATCCTTTGGAAACTCTGTGACAAGAGCGATGAAGATTTGGTGAAGGAGGCGGTTCAAGTGGGAGCGTTTCAGAAGGTTCTGGTTTTGTTGCAGGTTGGGTGTGAAGAGAAAACCAAAGGAAAGGCCACTGATTTGTTGAAGTTGTTGAATGTCTATAAGAATTCAGTGGAGTGTGTTGATTCGTCTTTGGATTTGAAGTATCTTAAGAAGTCCTTTTGA 1350 0.4556 MVLSWSRRRVFRYARKGKDLPGGAANANDGELDVADVVVPTHFRCPITLDLMSDPVTLSTGITYDRDSIEKWIESGNRTCPVTNQPLTTFDMIPNHAIRKMIQEWCVQHRSFGFERIPTPRIPVTQYEVSEICTKIISATQRGDYNKCQQLVGKIKIWGKESERNKKCIAENEDAATTLANAFSSFSNASIEKNLGLLENILGILTWIFPKVQQGYTQIQTQSMLSSEASLRCMVWFLNSKDLSSRQNAALVLKQVPTEPLAKTEGVLEALVKMIKEPVGPSATKASLKAIFQMVSSSNIEKEGIIKRCVELGLVTSLLEALVDGDRGICEKALGVLDCLCDYNQGKEVAKANVLTLPLVVKKILRVSGLASDFGVSILWKLCDKSDEDLVKEAVQVGAFQKVLVLLQVGCEEKTKGKATDLLKLLNVYKNSVECVDSSLDLKYLKKSF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01357 449 CDD RING-Ubox_PUB 40 92 IPR045210 -
Accr4g01357 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 113 IPR013083 -
Accr4g01357 449 SMART Ubox_2 42 105 IPR003613 GO:0004842|GO:0016567
Accr4g01357 449 FunFam RING-type E3 ubiquitin transferase 39 110 - -
Accr4g01357 449 Pfam U-box domain 39 110 IPR003613 GO:0004842|GO:0016567
Accr4g01357 449 Gene3D - 123 440 IPR011989 -
Accr4g01357 449 SUPERFAMILY ARM repeat 134 413 IPR016024 -
Accr4g01357 449 PANTHER WDSAM1 PROTEIN 37 431 IPR045185 GO:0061630
Accr4g01357 449 SUPERFAMILY RING/U-box 31 114 - -
Accr4g01357 449 ProSiteProfiles U-box domain profile. 38 112 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01357 Accr-Chr4 13339961 13341310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01357 35 449 U-box Gene Family AT5G37490 48.341 6.01e-124 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01357 - - qsa:O6P43_014260 541.191