Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01339 ATGACAATGGGTGATTCAGAGTCCTTCCCAGCATTCCCACTTGATAGAGCCGTTGAACAGGCAATTGTATCTATAAAGGAAGGCGCATACTTACTGAAGTGTGGACAGAGAGGAAAACCCAAGCTCTGCCTTTTTAGACTTTCTCCAGATGAAAAAACTTTGATTAGGTGTTCTGGACAAAAAGAAAAGCATTTGCAACTGAGTGAAATTACAAGAATTGTTCAAGAGCAGGGGAACATAAGGTCCCAGAGACTAAGCCAATTTGTTAAAGATTGCCATTCATTTTCACTAATCTATGCAAATGGCGAACGCTCACTTGATTTGATATGCAAGGACAAGGCACAGGCTACTTCTTGGTTAGTGGGATTGAGAGCTGTTATATCTAGGCCCCAGCACTCAAGGACGTTGAGTAGTTTAAGGACCCGTAAGGGAGTGCAAAGTTGTGTAAATAGTCCAGCTGGGTTCTTTCGGAGAAAGAAAAATCTTGGTCTTCTGGAGGATACTGTTGACTTTGCTCAGGTACACAGCTTACACGTGAGTCCTAACTTCTCACTTTCAGAAAGGTGCTTTTCTGAGGGTTTATCAGACGCATCTGATAGTATTTATTCTTCAGAGTCTTTCCCATACAATTCTCAGAGCATAATGGATATTAAAGTTCCAGGTTCTGCACATGTTGATCCAGATTTTCTCAATAAAAATGGCTCAGTATATTCTGACACAGAGTATGAGAAGAATTCGTCCTACAGGCGTCTGCCTCGTCCTTCCTCTCCTCATGTAGGAAACAACAATGCATTGAAGGATGTCATGGTATGGGGTGAAGAGATTGTAGGAGGTGACAATAATGTTCACAGTACATTGCCCAAGTTACTAGAATCCACTGTGATGCTAGATGTAAAAGATATAGCTTTAGGAGGAAAGCATGCTGTCTTGGTCACAAGCCAAGGGGAAGTATTCTGCTGGGGTCAAGGGAAGGGGGGAAGGCTGGGCCACAAAATCGACATTGATATTAGCTCTCCCAAAATTGTTGATTCTCTTAATGGGGTCCATGTAAAATCTGTTGCCTGTGGTGAGTATCATACATGTGCTCTGACAGACACTGGTGTAGTATATACATGGGGAAATGATGGTGGTTGTACAGATTCTGCAGATTGTGGGAAAAGTAGAAGTCAGTGGATACCACATAGACTTTCAGGACCTTTAGACGGTCTTCGTATTTTTAGTATTGCTTGTGGGGAATGGCATACCGCGATTGTCTCTTGTTGTGGAAGGCTATTTACATGTGGTGATGGTACTTTTGGTGTTCTGGGGCATGGGAATCTTCAGAGAATTTCCCAACCAAAAGAAGTTGAGTCACTCCAAGGCAAGCGAGTGAGGTCCGTTGCTTGCGGATCATGGCACACAGCAGCTATTGTAGAACTCATGTCTCCCCGTTGTAAGTACAGTACTTCTTGTAAGCTCTTTACCTGGGGCGATGGAGATGGTGGGCGGCTTGGTCATGCTGATAATGGAAGGAAGCTTTTACCAACATGTGTTACACAACTTGTGGACTATGACTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTTGCACTTACTAATTTGGGTAAAGTTTTTACCATAGGGAGTAAGGTGCATGGACAGCTAGGGAACTCTCATGCCAAGGAGAAGACCGCGACTCTTGTTGAAGGACATTTGAAACAGGAGTTTGTTAAGCAGATATCATGTGGTTCGTATCATGTGGCTGTGTTGACATCTTCAGGTAGTGTCTATACATGGGGCGAGGGAACACATGGGCAGTTAGGGTTGGGTGATACTAAAGACCGGTACTCGCCTTCTTTTGTTGAGGCTCTGAAAGATAGGCAGATAGAGAGTATTGCTTGTGGGTCAAGCTTCACAGCTGCAATTTGTTTACACAAACCTGTCTCTATTGCTGACCAGTCAGCTTGTAGCAGTTGTGAGCTTCCATTTGGGTTCAGAAGAAAGAGGCATAACTGCTATAACTGCGGTCTTCTCTTTTGCAATTCATGTAGCAATAACAAAGTTACAAATGCATCTCTAGCCCTAAGTAGGAACAAGGCCTTTCGGGTTTGTGATCGGTGTTTTCATAAATGCCAAGGGATTGCTCACTCATCTAAGGTATTTAAGTTGCAAAATTATAGCAGTATGCAGCAACTGAAGCACTGGAGTAAATTTCCTGATCTGACAGAAAATGGAGGGGAAACAGCAGGGTCACCACGTTCTCTTTCATCGTTCAGCCAATCGTGCTACATGAAAAGCATTCCAAGTGGGAGGAAGGACTGGAAAAATCAACAAGAAAGCCAGAAGCATGTGGAAAATTTTTCCTCATTGATGGGTGGAGTGCCACAATGGGGGAAAGTTTCCTGCCCTGATATGTTTAAAACAAATTATACTGAAAATTCTTTCATGCATTTTTCTTCATTGAAGAATAAGTTAGCTTCTTCTAATCCTTTGAGACTAGAATCTTTGATATCTAGGATCCCTAATGCAGAGAAAGATATGCCAAAGTCTGACAAAGTACTTGTAGAAGTTCAGAGGCTGAGAGCTATGGTTGGGAAGCTTGAAGAGAAATGTAAGCTCCAAAAGAGTATGTTACATGAATATCAAGAAAAGATTGAGAAGAGTATGTCGCTGGCGAAGGAGGAAGCAGCTAAATACAGGGCAGCAAAAGAGGTCATAAGAGTTTTGACTTCAAAACTTCAAACAATATCAGAAAAACACGAGGCAATACAAGAAGGAAAAGTTGCAGTCGTGCCTTATCTTTCAGATGTTGATACACCGAGAAGTTACAACTTAGACATTCAATCTGATTCTCCTATATTGTTCTCTGACAAATTAAGATCCAAATTTGGAAGAAGCAAATTCCTCCAAAGTGGTAAATCTAGGGAGAATTTTCAAGTCACTGGAGTCCAACAATCTCAGCAAGACGGTAACAAAGGATCAAATGATGAATGGAAAGAAGAACAGTACAATCCTGGTGTGTACATCACTCTCACTTCCTTACCCTCTGGAGAAATTGGCCTTAAAAGACTGAGATTCAGCCGGAAACGATTCTCTGAACAAGAAGCAGAGCAGTGGTGGGAAGAGAATCAAGCAAGAGTGTGCAGTGATTATGGGATTGAAGGATTCAGTAACAACAGCCAAACTCAAGTGTAA 3177 0.4215 MTMGDSESFPAFPLDRAVEQAIVSIKEGAYLLKCGQRGKPKLCLFRLSPDEKTLIRCSGQKEKHLQLSEITRIVQEQGNIRSQRLSQFVKDCHSFSLIYANGERSLDLICKDKAQATSWLVGLRAVISRPQHSRTLSSLRTRKGVQSCVNSPAGFFRRKKNLGLLEDTVDFAQVHSLHVSPNFSLSERCFSEGLSDASDSIYSSESFPYNSQSIMDIKVPGSAHVDPDFLNKNGSVYSDTEYEKNSSYRRLPRPSSPHVGNNNALKDVMVWGEEIVGGDNNVHSTLPKLLESTVMLDVKDIALGGKHAVLVTSQGEVFCWGQGKGGRLGHKIDIDISSPKIVDSLNGVHVKSVACGEYHTCALTDTGVVYTWGNDGGCTDSADCGKSRSQWIPHRLSGPLDGLRIFSIACGEWHTAIVSCCGRLFTCGDGTFGVLGHGNLQRISQPKEVESLQGKRVRSVACGSWHTAAIVELMSPRCKYSTSCKLFTWGDGDGGRLGHADNGRKLLPTCVTQLVDYDFVQVSCGRMLTVALTNLGKVFTIGSKVHGQLGNSHAKEKTATLVEGHLKQEFVKQISCGSYHVAVLTSSGSVYTWGEGTHGQLGLGDTKDRYSPSFVEALKDRQIESIACGSSFTAAICLHKPVSIADQSACSSCELPFGFRRKRHNCYNCGLLFCNSCSNNKVTNASLALSRNKAFRVCDRCFHKCQGIAHSSKVFKLQNYSSMQQLKHWSKFPDLTENGGETAGSPRSLSSFSQSCYMKSIPSGRKDWKNQQESQKHVENFSSLMGGVPQWGKVSCPDMFKTNYTENSFMHFSSLKNKLASSNPLRLESLISRIPNAEKDMPKSDKVLVEVQRLRAMVGKLEEKCKLQKSMLHEYQEKIEKSMSLAKEEAAKYRAAKEVIRVLTSKLQTISEKHEAIQEGKVAVVPYLSDVDTPRSYNLDIQSDSPILFSDKLRSKFGRSKFLQSGKSRENFQVTGVQQSQQDGNKGSNDEWKEEQYNPGVYITLTSLPSGEIGLKRLRFSRKRFSEQEAEQWWEENQARVCSDYGIEGFSNNSQTQV 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01339 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 422 473 IPR000408 -
Accr4g01339 1058 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 460 470 IPR000408 -
Accr4g01339 1058 CDD PH_PLC_plant-like 16 128 - -
Accr4g01339 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 715 IPR013083 -
Accr4g01339 1058 SUPERFAMILY PH domain-like 17 127 - -
Accr4g01339 1058 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 901 - -
Accr4g01339 1058 Gene3D - 480 641 IPR009091 -
Accr4g01339 1058 SUPERFAMILY RCC1/BLIP-II 266 640 IPR009091 -
Accr4g01339 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 315 363 IPR000408 -
Accr4g01339 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 422 470 IPR000408 -
Accr4g01339 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 486 532 IPR000408 -
Accr4g01339 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 587 636 IPR000408 -
Accr4g01339 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 367 417 IPR000408 -
Accr4g01339 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 536 584 IPR000408 -
Accr4g01339 1058 Pfam Transcription factor regulating root and shoot growth via Pin3 995 1045 IPR013591 -
Accr4g01339 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 484 535 IPR000408 -
Accr4g01339 1058 SMART fyve_4 638 707 IPR000306 GO:0046872
Accr4g01339 1058 Pfam FYVE zinc finger 646 706 IPR000306 GO:0046872
Accr4g01339 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Accr4g01339 1058 Gene3D - 223 479 IPR009091 -
Accr4g01339 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 588 639 IPR000408 -
Accr4g01339 1058 Pfam Pleckstrin homology domain 19 125 IPR001849 -
Accr4g01339 1058 SMART PH_update 24 130 IPR001849 -
Accr4g01339 1058 PRINTS Chromosome condensation regulator RCC1 signature 298 311 IPR000408 -
Accr4g01339 1058 PRINTS Chromosome condensation regulator RCC1 signature 583 604 IPR000408 -
Accr4g01339 1058 PRINTS Chromosome condensation regulator RCC1 signature 317 333 IPR000408 -
Accr4g01339 1058 PRINTS Chromosome condensation regulator RCC1 signature 525 543 IPR000408 -
Accr4g01339 1058 PRINTS Chromosome condensation regulator RCC1 signature 408 424 IPR000408 -
Accr4g01339 1058 PRINTS Chromosome condensation regulator RCC1 signature 424 438 IPR000408 -
Accr4g01339 1058 SUPERFAMILY FYVE/PHD zinc finger 645 717 IPR011011 -
Accr4g01339 1058 ProSiteProfiles BRX domain profile. 991 1046 IPR013591 -
Accr4g01339 1058 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 644 706 IPR017455 -
Accr4g01339 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 421 IPR000408 -
Accr4g01339 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 536 587 IPR000408 -
Accr4g01339 1058 Coils Coil 858 878 - -
Accr4g01339 1058 Gene3D - 17 135 IPR011993 -
Accr4g01339 1058 MobiDBLite consensus disorder prediction 973 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01339 Accr-Chr4 13140728 13146601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01339 991 1051 Major Intrinsic Protein MIP AT1G31880 44.262 9.07e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01339 - - gmx:100797223 1311.59