Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01338 ATGACAATGGGTGATTCAGAGTCCTTCCCAGCATTCCCACTTGATAGAGCCGTTGAACAGGCAATTGTATCTATAAAGGAAGGCGCATACTTACTGAAGTGTGGACAGAGAGGAAAACCCAAGCTCTGCCTTTTTAGACTTTCTCCAGACAAGGCACAGGCTACTTCTTGGTTAGTGGGATTGAGAGCTGTTATATCTAGGCCCCAGCACTCAAGGACGTTGAGTAGTTTAAGGACCCGTAAGGGAGTGCAAAGTTGTGTAAATAGTCCAGCTGGGTTCTTTCGGAGAAAGAAAAATCTTGGTCTTCTGGAGGATACTGTTGACTTTGCTCAGGTACACAGCTTACACGTGAGTCCTAACTTCTCACTTTCAGAAAGGTGCTTTTCTGAGGGTTTATCAGACGCATCTGATAGTATTTATTCTTCAGAGTCTTTCCCATACAATTCTCAGAGCATAATGGATATTAAAGTTCCAGGTTCTGCACATGTTGATCCAGATTTTCTCAATAAAAATGGCTCAGTATATTCTGACACAGAGTATGAGAAGAATTCGTCCTACAGGCGTCTGCCTCGTCCTTCCTCTCCTCATGTAGGAAACAACAATGCATTGAAGGATGTCATGGTATGGGGTGAAGAGATTGTAGGAGGTGACAATAATGTTCACAGTACATTGCCCAAGTTACTAGAATCCACTGTGATGCTAGATGTAAAAGATATAGCTTTAGGAGGAAAGCATGCTGTCTTGGTCACAAGCCAAGGGGAAGTATTCTGCTGGGGTCAAGGGAAGGGGGGAAGGCTGGGCCACAAAATCGACATTGATATTAGCTCTCCCAAAATTGTTGATTCTCTTAATGGGGTCCATGTAAAATCTGTTGCCTGTGGTGAGTATCATACATGTGCTCTGACAGACACTGGTGTAGTATATACATGGGGAAATGATGGTGGTTGTACAGATTCTGCAGATTGTGGGAAAAGTAGAAGTCAGTGGATACCACATAGACTTTCAGGACCTTTAGACGGTCTTCGTATTTTTAGTATTGCTTGTGGGGAATGGCATACCGCGATTGTCTCTTGTTGTGGAAGGCTATTTACATGTGGTGATGGTACTTTTGGTGTTCTGGGGCATGGGAATCTTCAGAGAATTTCCCAACCAAAAGAAGTTGAGTCACTCCAAGGCAAGCGAGTGAGGTCCGTTGCTTGCGGATCATGGCACACAGCAGCTATTGTAGAACTCATGTCTCCCCGTTGTAAGTACAGTACTTCTTGTAAGCTCTTTACCTGGGGCGATGGAGATGGTGGGCGGCTTGGTCATGCTGATAATGGAAGGAAGCTTTTACCAACATGTGTTACACAACTTGTGGACTATGACTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTTGCACTTACTAATTTGGGTAAAGTTTTTACCATAGGGAGTAAGGTGCATGGACAGCTAGGGAACTCTCATGCCAAGGAGAAGACCGCGACTCTTGTTGAAGGACATTTGAAACAGGAGTTTGTTAAGCAGATATCATGTGGTTCGTATCATGTGGCTGTGTTGACATCTTCAGGTAGTGTCTATACATGGGGCGAGGGAACACATGGGCAGTTAGGGTTGGGTGATACTAAAGACCGGTACTCGCCTTCTTTTGTTGAGGCTCTGAAAGATAGGCAGATAGAGAGTATTGCTTGTGGGTCAAGCTTCACAGCTGCAATTTGTTTACACAAACCTGTCTCTATTGCTGACCAGTCAGCTTGTAGCAGTTGTGAGCTTCCATTTGGGTTCAGAAGAAAGAGGCATAACTGCTATAACTGCGGTCTTCTCTTTTGCAATTCATGTAGCAATAACAAAGTTACAAATGCATCTCTAGCCCTAAGTAGGAACAAGGCCTTTCGGGTTTGTGATCGGTGTTTTCATAAATGCCAAGGGATTGCTCACTCATCTAAGGTATTTAAGTTGCAAAATTATAGCAGTATGCAGCAACTGAAGCACTGGAGTAAATTTCCTGATCTGACAGAAAATGGAGGGGAAACAGCAGGGTCACCACGTTCTCTTTCATCGTTCAGCCAATCGTGCTACATGAAAAGCATTCCAAGTGGGAGGAAGGACTGGAAAAATCAACAAGAAAGCCAGAAGCATGTGGAAAATTTTTCCTCATTGATGGGTGGAGTGCCACAATGGGGGAAAGTTTCCTGCCCTGATATGTTTAAAACAAATTATACTGAAAATTCTTTCATGCATTTTTCTTCATTGAAGAATAAGTTAGCTTCTTCTAATCCTTTGAGACTAGAATCTTTGATATCTAGGATCCCTAATGCAGAGAAAGATATGCCAAAGTCTGACAAAGTACTTGTAGAAGTTCAGAGGCTGAGAGCTATGGTTGGGAAGCTTGAAGAGAAATGTAAGCTCCAAAAGAGTATGTTACATGAATATCAAGAAAAGATTGAGAAGAGTATGTCGCTGGCGAAGGAGGAAGCAGCTAAATACAGGGCAGCAAAAGAGGTCATAAGAGTTTTGACTTCAAAACTTCAAACAATATCAGAAAAACACGAGGCAATACAAGAAGGAAAAGTTGCAGTCGTGCCTTATCTTTCAGATGTTGATACACCGAGAAGTTACAACTTAGACATTCAATCTGATTCTCCTATATTGTTCTCTGACAAATTAAGATCCAAATTTGGAAGAAGCAAATTCCTCCAAAGTGGTAAATCTAGGGAGAATTTTCAAGTCACTGGAGTCCAACAATCTCAGCAAGACGGTAACAAAGGATCAAATGATGAATGGAAAGAAGAACAGTACAATCCTGGTGTGTACATCACTCTCACTTCCTTACCCTCTGGAGAAATTGGCCTTAAAAGACTGAGATTCAGCCGGAAACGATTCTCTGAACAAGAAGCAGAGCAGTGGTGGGAAGAGAATCAAGCAAGAGTGTGCAGTGATTATGGGATTGAAGGATTCAGTAACAACAGCCAAACTCAAGTGTAA 2991 0.4249 MTMGDSESFPAFPLDRAVEQAIVSIKEGAYLLKCGQRGKPKLCLFRLSPDKAQATSWLVGLRAVISRPQHSRTLSSLRTRKGVQSCVNSPAGFFRRKKNLGLLEDTVDFAQVHSLHVSPNFSLSERCFSEGLSDASDSIYSSESFPYNSQSIMDIKVPGSAHVDPDFLNKNGSVYSDTEYEKNSSYRRLPRPSSPHVGNNNALKDVMVWGEEIVGGDNNVHSTLPKLLESTVMLDVKDIALGGKHAVLVTSQGEVFCWGQGKGGRLGHKIDIDISSPKIVDSLNGVHVKSVACGEYHTCALTDTGVVYTWGNDGGCTDSADCGKSRSQWIPHRLSGPLDGLRIFSIACGEWHTAIVSCCGRLFTCGDGTFGVLGHGNLQRISQPKEVESLQGKRVRSVACGSWHTAAIVELMSPRCKYSTSCKLFTWGDGDGGRLGHADNGRKLLPTCVTQLVDYDFVQVSCGRMLTVALTNLGKVFTIGSKVHGQLGNSHAKEKTATLVEGHLKQEFVKQISCGSYHVAVLTSSGSVYTWGEGTHGQLGLGDTKDRYSPSFVEALKDRQIESIACGSSFTAAICLHKPVSIADQSACSSCELPFGFRRKRHNCYNCGLLFCNSCSNNKVTNASLALSRNKAFRVCDRCFHKCQGIAHSSKVFKLQNYSSMQQLKHWSKFPDLTENGGETAGSPRSLSSFSQSCYMKSIPSGRKDWKNQQESQKHVENFSSLMGGVPQWGKVSCPDMFKTNYTENSFMHFSSLKNKLASSNPLRLESLISRIPNAEKDMPKSDKVLVEVQRLRAMVGKLEEKCKLQKSMLHEYQEKIEKSMSLAKEEAAKYRAAKEVIRVLTSKLQTISEKHEAIQEGKVAVVPYLSDVDTPRSYNLDIQSDSPILFSDKLRSKFGRSKFLQSGKSRENFQVTGVQQSQQDGNKGSNDEWKEEQYNPGVYITLTSLPSGEIGLKRLRFSRKRFSEQEAEQWWEENQARVCSDYGIEGFSNNSQTQV 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01338 996 PRINTS Chromosome condensation regulator RCC1 signature 362 376 IPR000408 -
Accr4g01338 996 PRINTS Chromosome condensation regulator RCC1 signature 521 542 IPR000408 -
Accr4g01338 996 PRINTS Chromosome condensation regulator RCC1 signature 346 362 IPR000408 -
Accr4g01338 996 PRINTS Chromosome condensation regulator RCC1 signature 236 249 IPR000408 -
Accr4g01338 996 PRINTS Chromosome condensation regulator RCC1 signature 255 271 IPR000408 -
Accr4g01338 996 PRINTS Chromosome condensation regulator RCC1 signature 463 481 IPR000408 -
Accr4g01338 996 ProSiteProfiles BRX domain profile. 929 984 IPR013591 -
Accr4g01338 996 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 582 644 IPR017455 -
Accr4g01338 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 305 359 IPR000408 -
Accr4g01338 996 SUPERFAMILY FYVE/PHD zinc finger 583 655 IPR011011 -
Accr4g01338 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 422 473 IPR000408 -
Accr4g01338 996 MobiDBLite consensus disorder prediction 911 931 - -
Accr4g01338 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 580 653 IPR013083 -
Accr4g01338 996 Gene3D - 151 418 IPR009091 -
Accr4g01338 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 474 525 IPR000408 -
Accr4g01338 996 Pfam Regulator of chromosome condensation (RCC1) repeat 360 408 IPR000408 -
Accr4g01338 996 Pfam Regulator of chromosome condensation (RCC1) repeat 305 355 IPR000408 -
Accr4g01338 996 Pfam Regulator of chromosome condensation (RCC1) repeat 253 301 IPR000408 -
Accr4g01338 996 Pfam Regulator of chromosome condensation (RCC1) repeat 525 574 IPR000408 -
Accr4g01338 996 Pfam Regulator of chromosome condensation (RCC1) repeat 474 522 IPR000408 -
Accr4g01338 996 Pfam Regulator of chromosome condensation (RCC1) repeat 424 470 IPR000408 -
Accr4g01338 996 Pfam FYVE zinc finger 584 644 IPR000306 GO:0046872
Accr4g01338 996 Coils Coil 796 816 - -
Accr4g01338 996 Pfam Transcription factor regulating root and shoot growth via Pin3 933 983 IPR013591 -
Accr4g01338 996 Gene3D - 419 579 IPR009091 -
Accr4g01338 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 360 411 IPR000408 -
Accr4g01338 996 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 398 408 IPR000408 -
Accr4g01338 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 253 304 IPR000408 -
Accr4g01338 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 526 577 IPR000408 -
Accr4g01338 996 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 47 839 - -
Accr4g01338 996 SUPERFAMILY RCC1/BLIP-II 204 578 IPR009091 -
Accr4g01338 996 SMART fyve_4 576 645 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01338 Accr-Chr4 13140728 13146601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01338 929 989 Major Intrinsic Protein MIP AT1G31880 44.262 9.36e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01338 - - gmx:100797223 1162.52