Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01320 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACAAGAAGGAGGAGGAGGGGAGAAGAAATGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCTCTCGTGTCCCTACCAAATGCAGGGACTCGTGTGGTTTACTTCCCACAGGGTCATAGCGAGCAGGTTGCAGCCACAACTAACAGAGAACTTGATGGGCACATACCCAATTACCCGAGCTTGCCGCCCCAGTTGAATTGCCAACTTCATAATGTCACAATGCATGCCGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTGCAGCCATTGACTCCACAAGAGCAGAAGGAAACATTTCTTCCTTTGGAATTGGGCATTCCGAGCAAACAGCCCTCAAATTATTTTTGCAAGACATTAACGGCTAGTGACACCAGCACGCATGGAGGGTTTTCTGTTCCTCGCCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCGGCACAAGAACTAATTGCCAGGGACCTCCATGATGTTGAGTGGAAGTTCAGACACATTTTTCGCGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGCGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTATTTATATGGAATGAAAAGAATCAGCTACTTTTAGGAATACGTCGTGCCATTCGGCCCCAAACTGTGATGCCATCATCAGTTCTTTCAACTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCATGCTGCTGCAACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGGGCTAGTCCTTCTGAGTTTGTCATACCACTTTCAAAATATGTCAAGGCTGTGTACCATACACGTGTTTCAGTTGGCATGCGATTCAGGATGCTTTTTGAGACTGAGGAATCGAGTGTACGCAGGTACATGGGAACAATAACTGGCATAAGCGATTTGGATCCTGTTCGTTGGCCAAATTCTCATTGGCGATCTGTCAAGGTTGGCTGGGATGAATCAACAGCAGGAGATAGGCAGCCACGGGTATCATTATGGGAAATTGAGCCTTTGACTACCTTCCCAATGTATCCATCACTCTTCCCCCTCAGACTGAAGCGACCATGGCATCCTGGCTCTTCTTCATCTTTGCATGATGGAAGAGACGACGCAGGGCTGATGTGGATGAGAGGTGGACCCGGAGATCAAGGTCTCAGCTCCCTCAATTTTCAAAGCAGTGGTTTGTTGCCATGGATGCAGCAGAGGCTAGATCCAACTTTGCTAGGAAATGACCATAATCCACAGTATCAAGCCATGTTGGCAGCTAATTTGCAGAACCTAGGGAGTGGCGATCTCTTGCGTCAACAAATGATGCATCTGCAACAACCCTTCCATTATCTTCAACAATCAGGAAACCCAAATTCTCTGCAACTTCAGCAGCAGCATCAAGCAATTCAGCAATCGATGAGTTCCAACATCCTTCAGCCACAAACTCAAGTGTTGGCAGAGAACTTGTCTCAGGCCCTCCTTCAGAAACCTCAACACAATCAAGAAGACCAAGCACCGCAGCCACAGCAGCAGCACCAACAACAGAATAATTATCATGATGGATTTTTTATCCAGGGTGATCAGCTCCCACAGAGGCAACACTCCCATGCTGCTTCACCGTCATATTCGAAACCTGATTTCTTTGATTCGAGCATAAAGTTCTCTTCGGTTTCCCCTGGGCAGAACATGCTCGGTTCACTTGGTCCTGAAGGGAGTAGCAATATTTTCAACTTACCAAGAAGCAGTCAGTCCGTGCTGACTGAACAATTGACCCAACAATCATGGAGTGCTAAGTATCCGCCCGTGCAGGTGAGTGCTGCCTTTGGCAACTCAATGTCACACTCGCAATATACTGAGAAAGATTCTGCAACGGTGCCATCACACTGTACTTCAGATGCCCACAATCCTACTCTCTTTGGAGTTAATATTGATTCGTCGGGACTTCTGCTCCCCACCACTGTCCCTGGTTTTTCAACATCCTCGGTTGGTACTGATGCATCAACCATGCCATTAGGGGACTCTGGATTCCAGGCTCCTCTGTATAATTGCGTGCAAGATTCTGCAGAGTTGATTCAGAGTTCAGGGCAAGTTGACCCACAAAACCATACTCCGACATTTGTCAAGGTCTACAAATCAGGTTCGGTTGGGCGCTCACTTGATATCTCTCGGTTCAGCAGCTATCATGAGCTGAGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCCTGGGAATCATTCGTCAATAATGTTTGGTACATAAAGATACTCTCACCTGAGGATATTATGAAGATGGGCGAGCAATCGGTGGAATCGTCGCTGGGTCCGAGCGGGGGACAAAGGATGAACAGCAGCACTGCAGAATCTCATGACCTTTCTGGCTTTCCATCAATGGGCTCGCTCGAATACTGA 2553 0.4747 MKLSTSGLGQQGQEGGGGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNRELDGHIPNYPSLPPQLNCQLHNVTMHADVETDEVYAQMTLQPLTPQEQKETFLPLELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAIRPQTVMPSSVLSTDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSSLHDGRDDAGLMWMRGGPGDQGLSSLNFQSSGLLPWMQQRLDPTLLGNDHNPQYQAMLAANLQNLGSGDLLRQQMMHLQQPFHYLQQSGNPNSLQLQQQHQAIQQSMSSNILQPQTQVLAENLSQALLQKPQHNQEDQAPQPQQQHQQQNNYHDGFFIQGDQLPQRQHSHAASPSYSKPDFFDSSIKFSSVSPGQNMLGSLGPEGSSNIFNLPRSSQSVLTEQLTQQSWSAKYPPVQVSAAFGNSMSHSQYTEKDSATVPSHCTSDAHNPTLFGVNIDSSGLLLPTTVPGFSTSSVGTDASTMPLGDSGFQAPLYNCVQDSAELIQSSGQVDPQNHTPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIMKMGEQSVESSLGPSGGQRMNSSTAESHDLSGFPSMGSLEY 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01320 850 SUPERFAMILY CAD & PB1 domains 717 798 - -
Accr4g01320 850 CDD B3_DNA 129 230 IPR003340 GO:0003677
Accr4g01320 850 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Accr4g01320 850 ProSiteProfiles PB1 domain profile. 724 808 IPR000270 GO:0005515
Accr4g01320 850 MobiDBLite consensus disorder prediction 817 840 - -
Accr4g01320 850 SMART B3_2 130 232 IPR003340 GO:0003677
Accr4g01320 850 SUPERFAMILY DNA-binding pseudobarrel domain 114 259 IPR015300 -
Accr4g01320 850 FunFam Auxin response factor 128 232 - -
Accr4g01320 850 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Accr4g01320 850 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 813 IPR044835 GO:0003677|GO:0006355|GO:0009725
Accr4g01320 850 MobiDBLite consensus disorder prediction 816 850 - -
Accr4g01320 850 Gene3D - 128 232 IPR015300 -
Accr4g01320 850 Gene3D - 720 813 - -
Accr4g01320 850 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Accr4g01320 850 FunFam Auxin response factor 719 813 - -
Accr4g01320 850 Gene3D - 294 366 - -
Accr4g01320 850 FunFam Auxin response factor 294 366 - -
Accr4g01320 850 Pfam AUX/IAA family 720 810 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01320 Accr-Chr4 12911038 12917587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01320 100 814 B3 DNA Binding Superfamily AT5G37020 68.923 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Accr4g01320 AUX_IAA 5.1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01320 - - gmx:100784804 1406.73