Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01308 ATGCAGTCGGTTCTCAAGAAATACTTCGGGTTCTCCGAGTTCCGCCCGTATCAGAGGGATGTCATCGAGAAAATATTAGAGAAGAGGGACTGCTTGGTAGTCATGGCTACTGGAAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCATTGGTTGCTAGCAAGACTGGCATAGTTGTTAGCCCTCTTATTTCATTAATGCAAGACCAGGTAATGGCTTTGAAACAACGGGGTATCAGAGCTGAGTATATCGGGAGCGCACAGACTGACCCCACTGTCCAGACTAAAGCTGAGAGTGGCCAATTTGACATTCTGTTCTTGACTCCTGAGAAAGCCTGCTCGATTTCTACCAGCTTCTGGTTGAACTTGCTGAAGGCAGGTATTTGTCTTTTTGCTGTTGACGAGGCACATTGTATATCAGAATGGGGCCATGATTTTAGGGTGGAATACAAGAAACTAGACAAGTTACGTGGTGTTCTATCTGATGTACCTTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGGTGACATAATCAGTTCCTTGAAGATGTGCAATCCTTATGTTTCGGTTGGTTCATTTGATCGCACCAACCTTTTCTATGTTGTCAAGCCTTTTAACCCCGGACAACATTTTGTATATGAGCTTGTGCAAGAGATTTCGAAAAAAGTAGCTAGTGGTGGTTCCACTATAATCTACTGCACTACAGTCAAAGATGTGGAACAGATTTCCAAGTCACTTTTGGAAGCAGGTGTTGCAGCTGGGATGTATCATGGGCAAATGAGTAATAAATCTCGTGAGGAATCTCATAGATTATTTGTTAGAGATGAACTGCGAGTCATGGTAGCAACTGTTGCTTTTGGTATGGGTATAGATAAGCCTGACATAAGACAGGTGATTCACTATGGCTGCCCTAAGAGCCTGGAGTCCTACTACCAGGAAAGTGGGCGGTGTGGTCGGGATGGTATAGCTTCTGTTTGTTGTCTTTATTACACAAGAAGTGACTTTACAAAGGGCAAGTTTTATTGTGGAGAACTACAAACAGCAAAACAAAGAAAAGCTGTCATGGAATCATTAATTGCGGCTGAACGTTATTGCTTGCTGACAACTTGCAGAAGAAAGTTTTTGCTTGAATACTTTGGGGAAAATGTTTCATCTGATAGATGTGGAAACTGTGATAACTGCATTGTCTCAAAGAAGCAACGGGACTTGTCGACAGAAGTATTTCTTCTACTGGCTTGCATTCAATCATGCAGGGGAAGATGGGGCCTGAACATGCCCATTGACATCCTGCGAGGGTCTCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAGCTTCCTCTTCATGGTCTTGGGAAAGATCACCCATCAAATTGGTGGAAAGCGCTTGGACATCAATTAATTTCTCATGGTTATTTGAAGGAGACTGTTGATGACGTGTACAGAACTGTGAGTGTCAGTCCAAAAGGAATGCAATTTCTGGCCTCTTCTACACCGGATTATCAACCACCCATAGTTCTGACAGTAACTGCTGAAATGCTTGATGAGGAGGAAAATAGATCTGCCCCAGAAGAATTCCAAAGTTTAGCCACTTCAGATACTGAAGGTTTTTCAGAGGCTGAGGTGCAACTCTACCAAATGCTTTTGGAAGAGAGAATGAAACTTGCAAGAAGTGTTGGAACAGCTCCATATGCCATTTGTGGCGATCAAACAATCAAGAAAATTGCACTGCAAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTGGTAACCAAATATGGAGATCATTTTCTTCAAGCTATTCAACAATTGTCGCAAGGATTGAACCTTTCACTGGATAGAGAAGCAAGCTTGCAAGCTCCTGCAGTAAGGAAAGTGTCCACCGTAAGTCTAACCAATAAACCAAAGAAGTTGACACAAGCAAAGTACGAGGCCTGGAAAATGTGGCAGGAAGATGGCCTTTCTTTTCAGATGATTGCTAACCTTCCAAGCAGATCAGCTCCTATAAAAGAACAAACTGTTGCTGATTATCTGCTGGAAGCTGCCGGAGAAGGATTGCCTTTTGATTGGACTAGATTCTGTGAGATGGTTGGACTGACACCTGAAATCGTCTCGGAAATTCAGGGTGCTATTCTGAAGGTTGGATCTACAGAAAAATTGAAGCCTATAAAAAATGAGTTACCAGAAGAAGTAAGCTATCTACAGATCAAGACTTATTTGTCAATGCGAAATACTGGAATATCTCTGGAAGGCACTCAGCACGGGAGCATCCAAGCAGCGAAAGATGGTGAATTCGTGAAGGAGGCATCAGATTTATTGCAGAATCCATTAGATACATACAACATGGAAGAAAGAAGTGGGGAAATTGACGTGTGTCCTAAGAGTCCAATGAAAAGAAATGACCTAGATAAGGATGAGGAATCGACTGGACCCACCAATGGTAGCCAGGTACAAAATCTTCTATTAGTCTGTGAGAAGGAGTTGTCAAACAAACGTCAAAAAGTCAGTGAAGAAAATCCTATCAAATTGGAGGCAACAGAGAGTTCTGTAGTAGAGTGGCTGAAGAACCATGAAGGGGCTACGTTGAATGATATTTTGAAGAACTTCAATGGATCCAGTGAAGATTCTGTGGTGGAACTACTAAATTGCCTTGAGGGTGAGTTTTTGATCTATAAGAAAAATGGCATGTACAGGCTTTTGTGA 2730 0.4249 MQSVLKKYFGFSEFRPYQRDVIEKILEKRDCLVVMATGSGKSLCYQVPPLVASKTGIVVSPLISLMQDQVMALKQRGIRAEYIGSAQTDPTVQTKAESGQFDILFLTPEKACSISTSFWLNLLKAGICLFAVDEAHCISEWGHDFRVEYKKLDKLRGVLSDVPFVGLTATATEKVRGDIISSLKMCNPYVSVGSFDRTNLFYVVKPFNPGQHFVYELVQEISKKVASGGSTIIYCTTVKDVEQISKSLLEAGVAAGMYHGQMSNKSREESHRLFVRDELRVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGIASVCCLYYTRSDFTKGKFYCGELQTAKQRKAVMESLIAAERYCLLTTCRRKFLLEYFGENVSSDRCGNCDNCIVSKKQRDLSTEVFLLLACIQSCRGRWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKDHPSNWWKALGHQLISHGYLKETVDDVYRTVSVSPKGMQFLASSTPDYQPPIVLTVTAEMLDEEENRSAPEEFQSLATSDTEGFSEAEVQLYQMLLEERMKLARSVGTAPYAICGDQTIKKIALQRPSTKARLANIDGVNQHLVTKYGDHFLQAIQQLSQGLNLSLDREASLQAPAVRKVSTVSLTNKPKKLTQAKYEAWKMWQEDGLSFQMIANLPSRSAPIKEQTVADYLLEAAGEGLPFDWTRFCEMVGLTPEIVSEIQGAILKVGSTEKLKPIKNELPEEVSYLQIKTYLSMRNTGISLEGTQHGSIQAAKDGEFVKEASDLLQNPLDTYNMEERSGEIDVCPKSPMKRNDLDKDEESTGPTNGSQVQNLLLVCEKELSNKRQKVSEENPIKLEATESSVVEWLKNHEGATLNDILKNFNGSSEDSVVELLNCLEGEFLIYKKNGMYRLL 909
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01308 909 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Accr4g01308 909 SMART helicmild6 242 323 IPR001650 -
Accr4g01308 909 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 681 - -
Accr4g01308 909 Gene3D - 197 399 IPR027417 -
Accr4g01308 909 MobiDBLite consensus disorder prediction 799 824 - -
Accr4g01308 909 SMART hrdc7 540 620 IPR002121 GO:0003676
Accr4g01308 909 Pfam Helicase conserved C-terminal domain 218 322 IPR001650 -
Accr4g01308 909 Gene3D - 1 195 IPR027417 -
Accr4g01308 909 Pfam RecQ zinc-binding 336 396 IPR032284 -
Accr4g01308 909 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Accr4g01308 909 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Accr4g01308 909 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Accr4g01308 909 FunFam ATP-dependent DNA helicase 536 626 - -
Accr4g01308 909 Gene3D HRDC domain 536 616 IPR044876 -
Accr4g01308 909 SUPERFAMILY "Winged helix" DNA-binding domain 395 502 IPR036390 -
Accr4g01308 909 SMART ultradead3 10 205 IPR014001 -
Accr4g01308 909 MobiDBLite consensus disorder prediction 799 817 - -
Accr4g01308 909 FunFam ATP-dependent DNA helicase 197 398 - -
Accr4g01308 909 Gene3D - 400 524 IPR036388 -
Accr4g01308 909 FunFam ATP-dependent DNA helicase 399 523 - -
Accr4g01308 909 CDD SF2_C_RecQ 197 332 - -
Accr4g01308 909 Pfam RQC domain 400 497 IPR018982 GO:0006260|GO:0006281|GO:0043138
Accr4g01308 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 213 368 IPR001650 -
Accr4g01308 909 FunFam ATP-dependent DNA helicase 1 195 - -
Accr4g01308 909 Pfam Helix-turn-helix domain 652 749 IPR029491 -
Accr4g01308 909 NCBIfam RecQ family ATP-dependent DNA helicase 3 456 IPR004589 GO:0004386|GO:0006310
Accr4g01308 909 SUPERFAMILY HRDC-like 539 615 IPR010997 GO:0000166|GO:0044237
Accr4g01308 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 337 IPR027417 -
Accr4g01308 909 CDD DEXHc_RecQ 2 196 - -
Accr4g01308 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Accr4g01308 Accr-Chr4 12806901 12815689 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01308 9 339 Eukaryotic Initiation Factors Gene Family AT3G19760 21.802 9.43e-09 56.6
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01308 4 12806901 12815689 Accr4g01308 4 12806901 12815689 ECH