Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01292 ATGTCTCTTCACTCTAATCATCTCCATCCTCAACCACCTGGGGAGGATTACCCAGAAACATGCACAACCAGCCATCCAAGGGTCCTCCGAATCATACTCACCGATCACGACGTCACTGATTCTGACTCTGACCCTGACTCTTCCCTCAATAATTCATCCAGAGGCAAGCGCCTCATCTCCCTCCATCTTCCCTCCCCCGATCCTCCTTCCTCCTCCGCTTCTCCCCGCACTCCGGCCAAAACCAACCCCAACCGATTCAGGCGGCCCTCCGTTTCCTCCGCCTCTCGCTGCCATAAGAAGTTCAGAGGCGTTCGCCAGAGACCTTGGGGTCGCTGGGCCGCCGAGATCCGGGACCCGAACCTAGGAAAACGGGTCTGGCTTGGAACCTTCGACACGGCGGAGGAAGCCGCGTCTGAGTACGACAGGGCTGCTCTGAAGATCAAGGGTCCTCACGCGATCACCAACTTCCCGTGCTCCGTCATTACGGAGGACACAGTGACGCCGGAAGCCGCCGCGGATGAAAGTCCCAGCACTGAAGGAACGGTTTCGTACTCCGACACGGCGGCGTCGCCCACGTCTGTTCTTCCCCATGATGGAGATTCGAAGGTGTTTGACGATTTCCGTTACGGCGATGTGGATGCGTTCGGGTTCGACATAGACGGGCCGCTGAGTTTGCCGGACGTGGACTCGATGTTGTCGAGTCAACCGTTTCGCAAGGAGGAGTTCGGCGAGTTTGACTTCGATGACTTGACGTGGCCCAACTAA 765 0.5778 MSLHSNHLHPQPPGEDYPETCTTSHPRVLRIILTDHDVTDSDSDPDSSLNNSSRGKRLISLHLPSPDPPSSSASPRTPAKTNPNRFRRPSVSSASRCHKKFRGVRQRPWGRWAAEIRDPNLGKRVWLGTFDTAEEAASEYDRAALKIKGPHAITNFPCSVITEDTVTPEAAADESPSTEGTVSYSDTAASPTSVLPHDGDSKVFDDFRYGDVDAFGFDIDGPLSLPDVDSMLSSQPFRKEEFGEFDFDDLTWPN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01292 254 FunFam Ethylene-responsive transcription factor 2 99 158 - -
Accr4g01292 254 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Accr4g01292 254 MobiDBLite consensus disorder prediction 168 198 - -
Accr4g01292 254 MobiDBLite consensus disorder prediction 74 91 - -
Accr4g01292 254 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 196 - -
Accr4g01292 254 MobiDBLite consensus disorder prediction 1 98 - -
Accr4g01292 254 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Accr4g01292 254 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Accr4g01292 254 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Accr4g01292 254 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Accr4g01292 254 MobiDBLite consensus disorder prediction 171 194 - -
Accr4g01292 254 MobiDBLite consensus disorder prediction 44 58 - -
Accr4g01292 254 SUPERFAMILY DNA-binding domain 100 159 IPR016177 GO:0003677
Accr4g01292 254 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
Accr4g01292 254 PIRSF PTI6 14 253 IPR017392 GO:0003700
Accr4g01292 254 Gene3D AP2/ERF domain 99 159 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01292 Accr-Chr4 12620748 12621512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01292 19 197 AP2-EREBP Transcription Factor Family AT4G27950 41.753 7.11e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr4g01292 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01292 K13434 - qsa:O6P43_035061 204.912