Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr4g01289 | ATGTCGTATGTTCCTCCGCACCTCAGGAGCTCCAGCTCCACTACTGTTGCTGCCAGAATTTCATCTCTCGCCCTAGACAACAACGATTACAGCAAACTTGCCAATTCCAACTCCCACACTACTCCCACTCCTCCTTCGTCCTCCACCTTCTCCAATTCCTCTCGGCGGAGCTCTGGAGCTCCTCCTTTATCCCGCACTCTTTCAGTCCCCGAATCCGTGTTCCCTCAGTGGCAGCCGTCTGAACGCGTTTCTCGCATGAAGCCAGAGCAGATTGAAGAGGTTCGACTGCGGCTTAATCTCGATGTTTCTGTTGCTTCTGACTCTCTTCCTGCACCTGCACCAATAGAATCATTTTCAGACATGTGTTTGCACCAAAGTATCATGAAGGATATCGCGTATCATGAATACACAAGGCCAACTTCTATCCAGGCTCAAGCCATGCCTATCGCTCTTAGCGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAAACTGCAGCTTTCACCATTCCTATGATAGAGCATTGCTTGGCTCAACCACCAATTCGGCGTGGTGATGGTCCTTTAGCATTGGTTTTGGCTCCTACTAGAGAGCTTGCTCAACAAATTGAGAAAGAGGTTAAGGCATTTAGCAGATCACTTGAATCGTTTAAAACTGCTATAGTTGTAGGCGGAACCAACATTGAAAAGCAGAGATCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCTACCCCTGGAAGATTCATCGATCATTTACAACAAGGCAATACTTCCCTTTCTAGGATTTCTTTTGTTGTCCTAGATGAGGCAGATAGGATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTCATGAGAAATCTTCCGGAGAAGCATCAAACATTGTTATTTAGTGCAACCATGCCTGAGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCAAGTCCGGTGCAAGTGAAGGTAGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAAAATCTTGTGAAGGTTTCTGAAAATGAGAAGATTGACCGGCTTCTGGATATGCTTGTTGAGGAGGCGTCACAGGCTGAAAAATTCAGTCGGCCATTTCCATTAACAATTGTGTTTGTGGAAAGAAAGACAAGGTGTGATGAAATTGCTGAAGCATTGGTTGCTCAAGGTTTATCTGCTGTTTCTCTTCATGGTGGCCGGAGTCAGAATGAAAGAGAGGCTGCTTTGCATGATTTTAGAAGTGGCTCCACTAACATTTTGGTTGCTACTGATGTCGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAATTTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGCAGGACAGGGCGTGCAGGATCAACAGGCCAGTCGACTTCTTTTTACACTGATCGTGATATGTTCCTTGTTGCAAATATAAGGAAGGGTATAGCGGATGCCGAGTCTGGGAATGCTGTGGCTTTTGCAACTGGGAAGGTTGCTAGAAGGAAGGAGAAAGAGGCGGCAGCTGCCCAAAAAGAGGCAAAGATAGCATTGTCCAAGAACTTGTCTTCCGGAGCTGCCTCAATCGCTATTGAGGATAAGTATAGGTTCATGATTGCCGCATCAAATATGAAGAGAGAGGGGGCAGCAGATAGTGCTTGGGATGATTGA | 1686 | 0.462 | MSYVPPHLRSSSSTTVAARISSLALDNNDYSKLANSNSHTTPTPPSSSTFSNSSRRSSGAPPLSRTLSVPESVFPQWQPSERVSRMKPEQIEEVRLRLNLDVSVASDSLPAPAPIESFSDMCLHQSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESFKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPEEIEALAKEYLASPVQVKVGKVSSPTANVCQNLVKVSENEKIDRLLDMLVEEASQAEKFSRPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQNEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQSTSFYTDRDMFLVANIRKGIADAESGNAVAFATGKVARRKEKEAAAAQKEAKIALSKNLSSGAASIAIEDKYRFMIAASNMKREGAADSAWDD | 561 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr4g01289 | 561 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 269 | 277 | IPR000629 | - | |
Accr4g01289 | 561 | Gene3D | - | 76 | 327 | IPR027417 | - | |
Accr4g01289 | 561 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 347 | 505 | IPR001650 | - | |
Accr4g01289 | 561 | CDD | DEADc | 127 | 324 | - | - | |
Accr4g01289 | 561 | Gene3D | - | 329 | 523 | IPR027417 | - | |
Accr4g01289 | 561 | FunFam | probable ATP-dependent RNA helicase DDX17 | 76 | 326 | - | - | |
Accr4g01289 | 561 | Coils | Coil | 505 | 525 | - | - | |
Accr4g01289 | 561 | SMART | ultradead3 | 135 | 340 | IPR014001 | - | |
Accr4g01289 | 561 | Pfam | Helicase conserved C-terminal domain | 347 | 464 | IPR001650 | - | |
Accr4g01289 | 561 | CDD | SF2_C_DEAD | 337 | 473 | - | - | |
Accr4g01289 | 561 | MobiDBLite | consensus disorder prediction | 30 | 72 | - | - | |
Accr4g01289 | 561 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 116 | 144 | IPR014014 | GO:0003724 | |
Accr4g01289 | 561 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 188 | 484 | IPR027417 | - | |
Accr4g01289 | 561 | SMART | helicmild6 | 383 | 464 | IPR001650 | - | |
Accr4g01289 | 561 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 147 | 323 | IPR014001 | - | |
Accr4g01289 | 561 | Pfam | DEAD/DEAH box helicase | 140 | 311 | IPR011545 | GO:0003676|GO:0005524 | |
Accr4g01289 | 561 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 105 | 516 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr4g01289 | Accr-Chr4 | 12558757 | 12564794 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr4g01289 | 116 | 477 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 36.339 | 1.76e-68 | 225 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr4g01289 | K12823 | - | gmx:100818387 | 899.427 |