Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01252 ATGGAGATATCCTTGTTAAATGTGCTTGTCAATGGCATATCCTCATTTTTGCACCTATCTTTTTCTGGGAATGGGAACTCAGAATTTGTTTCAAAGTATTACAAAAGGGTGGGGGAGACACTTAAGTTGCTCAAGCCTATAGCTGATGCTTTGGTTAATTCTGAATTAGCTTCTGATGAAGTGCTTAACAAGGCATTTGAAGAAGTGGGTCGGGCTGTTGACGAGTTGAGAGAGCTTTTTGGGAATTGGCACCCGTTGTCTAGCAAAGTTTACCTTGTCATGCGAGTTGAATCCTTGCTATCTAGGATTCAGACTTCAGCACTCAATATTTTCCAGCAGCTGAAGATTTCTCATCTAAGTCTCTCAGACGAACTGAATACTGTACAAGTTGAGCACTGTGCTGAGAAACTTAAGCTTTTGGGACATGAGGAGGAAATCTCGTCAGTCATTAAAGAAGCTATTAGCGAACAAATGGAAGGTGCAGGACCTAGTTCAGAGGTCCTAACAAACATTGCGGAGAGCCTGAGCCTGAGGTCTAACCAAGAAATTCTGATTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGATTGCTGAACAAGCTGAAAAAACTGCTGAAGCTGAATATATTGATCAAATGATTACTCTTGTAACTCGCATGCATGAGCGTCTTGTTGCGCTTAAGCAAGCCCAGAGCAGCAGCCCAGTTGCAGTACCTCCTGATTTTTGCTGTCCTCTTTCTTTGGAGTTAATGATGGATCCGGTAATTGTGGCTTCAGGGCAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGATTTGGGACTTACTGTCTGTCCAAAGACCCGTCAGACCTTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCGTTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCCAGTTGATCCCATAGTGTCCACAAACTTAAATCAAACATCTTTTCTTCATGGGTACATGGAATCTGGTGCAACCAGGGAATCACCTGTTTTAGCTCATTCTAGGACCAACCAACCACCCTCTCCGGAGGCAGTTCGCTCCCATTCTTTCAGTTCACCGAGTAAGACCTTAACTTCTGTAGGAATCCACAGAGAAGGAACATCACCATTTCATCCTCGTTCAACTTCAGAAGGCTCCTTAAGCGTCATGACTAATGGACAGTGTTTGGATTTTGCAAGAACATCAGCTGCAGGTTCTGATGATAGGTCTGCTAGCTCAGATGAAAGGAGTGAGGATTCAGCTGTCCAACCGTCAATGTCTCAATCTATAACTGAATCTTCCAATGCCCATAGCTCTGAACAATCCCAAGGCCATGTTAGAGCAGCTTCTGATTCCAGTGCACTTTCCAGTGTTCAAGGAACACAAGGCGATGGTAACAGTACTCCTCAGCTGTCAGCCACTTCTGTCAACGGTAAGGATGGTTCTGTGGGGGTAAATTCTGGGATAGATGCTAATGGTGCTCCCCAGAGAGAACCTGAGATCTTACCCCGTGTGGAGACAAGGCCTCGAAACCAAAGTATGTGGCGGCGGCCATCAGAAAGATTTTTTCCTAGGGTGGTGCCCTCTGCTGGCGAAACAAGAGCTGATCTTTCTGGTATTGAAGTCGAGGTTAAGAGTTTGGTTGAGGATTTGAAGAGCACTTCTGTTGATACTCAAAGGGAGGCAACATCAAGGCTCCGCTTTCTTGCTAAGCACAACATGGATAATCGACTTGTGATTGCAAACTGTGGAGCCATCGAATTGTTGGTTGAGTTGCTTAAATCAACTGATACGACAATCCAGGAAAATTCTGTGACGGCACTTCTGAACTTATCAATCAATGATAACAACAAAAGTGCAATTGCAAATGCTGGGGCAATTGAACCTCTAATCCATGTGCTTGAGACAGGAAGCCCCGAAGCGAAGGAGAATTCAGCTGCCACTCTCTTCAGCTTATCAGTGATTGAAGAAAACAAGATCAGGATAGGGAGGTCTGGAGCCGTTGGGCCTCTGGTTGATTTATTAGGTAATGGAACTCCTAGAGGAAAGAAAGATGCTGCCACTGCTTTATTTAACCTGTCAATTTATCATGAAAACAAGGGCCGCATTGTGCAAGCTGGATCCGTGAAGCACCTTGTGGAATTAATGGACCCAGCGGCTGGTATGGTTGATAAGGCGGTGGCTGTTTTAGCAAACCTCGCCACAATTCAAGAAGGAAGAATCGCCATTGGCCAGGAAGGCGGGATCCCTGTTTTAGTTGAGGTTGTTGAGTTGGGTTCTGCAAGAGGAAAGGAGAACGCAGCCGCGGCTCTACTACACCTTTGCTCAAACAATCCTCGATATTTGAGCACGGTGCTTCAAGAAGGAGCTGTCCCACCATTAGTAGCCTTGTCACAGTCAGGCACCCCAAGGGCTAAAGAAAAGGCGCAGGCCCTCCTCAACCAAATTAGAAGTCAAAGAAATGCTGGGAGAGGCTGA 2487 0.454 MEISLLNVLVNGISSFLHLSFSGNGNSEFVSKYYKRVGETLKLLKPIADALVNSELASDEVLNKAFEEVGRAVDELRELFGNWHPLSSKVYLVMRVESLLSRIQTSALNIFQQLKISHLSLSDELNTVQVEHCAEKLKLLGHEEEISSVIKEAISEQMEGAGPSSEVLTNIAESLSLRSNQEILIEAVALEKLKEIAEQAEKTAEAEYIDQMITLVTRMHERLVALKQAQSSSPVAVPPDFCCPLSLELMMDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPVDPIVSTNLNQTSFLHGYMESGATRESPVLAHSRTNQPPSPEAVRSHSFSSPSKTLTSVGIHREGTSPFHPRSTSEGSLSVMTNGQCLDFARTSAAGSDDRSASSDERSEDSAVQPSMSQSITESSNAHSSEQSQGHVRAASDSSALSSVQGTQGDGNSTPQLSATSVNGKDGSVGVNSGIDANGAPQREPEILPRVETRPRNQSMWRRPSERFFPRVVPSAGETRADLSGIEVEVKSLVEDLKSTSVDTQREATSRLRFLAKHNMDNRLVIANCGAIELLVELLKSTDTTIQENSVTALLNLSINDNNKSAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIRIGRSGAVGPLVDLLGNGTPRGKKDAATALFNLSIYHENKGRIVQAGSVKHLVELMDPAAGMVDKAVAVLANLATIQEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSNNPRYLSTVLQEGAVPPLVALSQSGTPRAKEKAQALLNQIRSQRNAGRG 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01252 828 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Accr4g01252 828 MobiDBLite consensus disorder prediction 405 516 - -
Accr4g01252 828 Coils Coil 187 210 - -
Accr4g01252 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 313 IPR013083 -
Accr4g01252 828 SMART arm_5 576 616 IPR000225 GO:0005515
Accr4g01252 828 SMART arm_5 617 657 IPR000225 GO:0005515
Accr4g01252 828 SMART arm_5 780 821 IPR000225 GO:0005515
Accr4g01252 828 SMART arm_5 739 779 IPR000225 GO:0005515
Accr4g01252 828 SMART arm_5 699 738 IPR000225 GO:0005515
Accr4g01252 828 SMART arm_5 658 698 IPR000225 GO:0005515
Accr4g01252 828 Pfam U-box domain 237 307 IPR003613 GO:0004842|GO:0016567
Accr4g01252 828 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Accr4g01252 828 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 587 629 IPR000225 GO:0005515
Accr4g01252 828 PANTHER U BOX DOMAIN-CONTAINING 31 818 - -
Accr4g01252 828 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 710 751 IPR000225 GO:0005515
Accr4g01252 828 FunFam RING-type E3 ubiquitin transferase 531 825 - -
Accr4g01252 828 SUPERFAMILY ARM repeat 547 819 IPR016024 -
Accr4g01252 828 SUPERFAMILY RING/U-box 227 313 - -
Accr4g01252 828 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 669 711 IPR000225 GO:0005515
Accr4g01252 828 Gene3D - 546 618 IPR011989 -
Accr4g01252 828 Gene3D - 619 722 IPR011989 -
Accr4g01252 828 FunFam RING-type E3 ubiquitin transferase 236 311 - -
Accr4g01252 828 MobiDBLite consensus disorder prediction 420 485 - -
Accr4g01252 828 CDD RING-Ubox_PUB 238 290 IPR045210 -
Accr4g01252 828 Gene3D - 723 825 IPR011989 -
Accr4g01252 828 MobiDBLite consensus disorder prediction 341 391 - -
Accr4g01252 828 Pfam Armadillo/beta-catenin-like repeat 578 615 IPR000225 GO:0005515
Accr4g01252 828 Pfam Armadillo/beta-catenin-like repeat 617 656 IPR000225 GO:0005515
Accr4g01252 828 Pfam Armadillo/beta-catenin-like repeat 660 697 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01252 Accr-Chr4 12033914 12036986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01252 196 828 U-box Gene Family AT2G23140 60.809 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01252 - - gmx:100811250 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01252 4 12033914 12036986 Accr3g02040 3 31729819 31733041 CCT