Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01122 ATGGCCGAACTGGAGAATCCATCTTCAATGGCAGTTTCTGCAGCTTCTGGAGAAGCTAGCTTTTCATCCTCCGGCGTTCAGAACGAACCTGGGGAACTCCCTCCCCCGAAAAAGAAGCGAAATCTCCCTGGAATGCCGGATCCAGATGCCGAGGTGATTGCTTTATCGCCCAAAACACTGTTGGCGACGAACCGTTTTGTATGCGAGATCTGCAATAAAGGATTTCAACGAGACCAAAACCTGCAACTTCATCGACGCGGCCACAACCTGCCATGGAAACTACGGCAGCGAACCAGCAAGGATATTCGCAAGAGAGTCTACGTGTGCCCCGAGCCTTCCTGTGTCCACCATAACCCGTCGAGGGCGCTAGGTGATCTTACCGGCATCAAGAAGCATTTCTGTAGGAAACATGGCGAAAAGAAGTGGAAGTGTGAGCGTTGCTCCAAGAAATACGCCGTACAGTCCGATTGGAAGGCTCATATGAAGACTTGCGGAACTAGAGAGTACAAATGTGACTGTGGCACCTTATTCTCTAGGAGGGATAGCTTCATTACTCACAGGGCCTTTTGCGATGCTTTGGCGGAAGAAAGCGCCAGAACCCGAACCCTAACCATTGGTGAAGCGTCGGAGGGGAATTCTAATGCGAAGGTTGCTATGGCTTCGCCACCGCAGCCTCCACTAACTCCGTCAACGTCTGTGGTGTCTCCAGCTTTGTCCATTCAGAGCTCAGAAGTCTCGGAAAACCCAATCAGGCTGTCGCCGCCGTCCTCGAACGTAAAATGTTTACCAGCAACCACCGTCGCAAACAGTACTCCCTCCTGTTCTACCACAGTTTTCGCCAGTATATTTGCATCCTCAAGTGCTGCTCCTTCCCAAGCATCGTCGACACTTTCATCGTATTCCACTATGATGTCTAACTTGCCTTGTTCGGATTGCCCAACTACTACCCCAACGTTGTCTGCGATAGAGCCCACTTCTCTGTCTCTCTCCCCATCGCTTTATCTCTCCAATAATGACTCATCCCTGTTCCAGGACCAACGCGACCCTCGGCACTACACTGCGACTCCTCAGCCTGCACTTTCCGCCACCGCACTACTCCAAAAGGCAGCTCAAATGGGTGCGGCAGCGTCAAATGCATCTTTGCTTCGAGGTTTAGGCCTAGCACCAGCAACTTCCTTGGCACAAAACGATAGTACCCCGACACAGTGGAATAGCTGTATAAAGACAGAGAATCACCCGTTGCCTGATGATGATGGCCTTATGCTTGGAATTCCGTCTGCTGGTAATACGGGTTTTGCCAACTTGATGATGGGCTCGTCGTCGTTTGGGGGACAGCCGATGACTCGTGATCTACTTGGTCTTAGCATAGGAGGTTCCGGTGGCGGGGCCAGCGTCAGGGGTGGCCTCTCTGCTTTGCTCACCTCTTTTGGTGGGAGATTTGATGTTGCAGGATCATCGACGGGAGGGAGGAATGCTCCGGCTGAAGATTAG 1491 0.5198 MAELENPSSMAVSAASGEASFSSSGVQNEPGELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKDIRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARTRTLTIGEASEGNSNAKVAMASPPQPPLTPSTSVVSPALSIQSSEVSENPIRLSPPSSNVKCLPATTVANSTPSCSTTVFASIFASSSAAPSQASSTLSSYSTMMSNLPCSDCPTTTPTLSAIEPTSLSLSPSLYLSNNDSSLFQDQRDPRHYTATPQPALSATALLQKAAQMGAAASNASLLRGLGLAPATSLAQNDSTPTQWNSCIKTENHPLPDDDGLMLGIPSAGNTGFANLMMGSSSFGGQPMTRDLLGLSIGGSGGGASVRGGLSALLTSFGGRFDVAGSSTGGRNAPAED 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01122 496 Pfam Zinc-finger of C2H2 type 66 88 - -
Accr4g01122 496 SMART c2h2final6 107 137 IPR013087 -
Accr4g01122 496 SMART c2h2final6 66 88 IPR013087 -
Accr4g01122 496 SMART c2h2final6 142 162 IPR013087 -
Accr4g01122 496 Gene3D Classic Zinc Finger 46 111 - -
Accr4g01122 496 MobiDBLite consensus disorder prediction 9 29 - -
Accr4g01122 496 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Accr4g01122 496 FunFam protein indeterminate-domain 12-like 45 113 - -
Accr4g01122 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Accr4g01122 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 459 IPR031140 -
Accr4g01122 496 Gene3D Classic Zinc Finger 120 200 - -
Accr4g01122 496 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Accr4g01122 496 MobiDBLite consensus disorder prediction 210 233 - -
Accr4g01122 496 MobiDBLite consensus disorder prediction 1 50 - -
Accr4g01122 496 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01122 Accr-Chr4 10698321 10700743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01122 13 475 IDZ Gene Family AT5G66730 51.779 6.44e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr4g01122 zf-met 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01122 K25869 - qsa:O6P43_018833 627.861