Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01121 ATGGCCGAACTGGAGAATCCATCTTCAATGGCAGTTTCTGCAGCTTCTGGAGAAGCTAGCTTTTCATCCTCCGGCGTTCAGAACGAACCTGGGGAACTCCCTCCCCCGAAAAAGAAGCGAAATCTCCCTGGAATGCCGGATCCAGATGCCGAGGTGATTGCTTTATCGCCCAAAACACTGTTGGCGACGAACCGTTTTGTATGCGAGATCTGCAATAAAGGATTTCAACGAGACCAAAACCTGCAACTTCATCGACGCGGCCACAACCTGCCATGGAAACTACGGCAGCGAACCAGCAAGGATATTCGCAAGAGAGTCTACGTGTGCCCCGAGCCTTCCTGTGTCCACCATAACCCGTCGAGGGCGCTAGGTGATCTTACCGGCATCAAGAAGCATTTCTGTAGGAAACATGGCGAAAAGAAGTGGAAGTGTGAGCGTTGCTCCAAGAAATACGCCGTACAGTCCGATTGGAAGGCTCATATGAAGACTTGCGGAACTAGAGAGTACAAATGTGACTGTGGCACCTTATTCTCTAGGAGGGATAGCTTCATTACTCACAGGGCCTTTTGCGATGCTTTGGCGGAAGAAAGCGCCAGAACCCGAACCCTAACCATTGGTGAAGCGTCGGAGGGGAATTCTAATGCGAAGGTTGCTATGGCTTCGCCACCGCAGCCTCCACTAACTCCGTCAACGTCTGTGGTGTCTCCAGCTTTGTCCATTCAGAGCTCAGTCTCGGAAAACCCAATCAGGCTGTCGCCGCCGTCCTCGAACGTAAAATGTTTACCAGCAACCACCGTCGCAAACAGTACTCCCTCCTGTTCTACCACAGTTTTCGCCAGTATATTTGCATCCTCAAGTGCTGCTCCTTCCCAAGCATCGTCGACACTTTCATCGTATTCCACTATGATGTCTAACTTGCCTTGTTCGGATTGCCCAACTACTACCCCAACGTTGTCTGCGATAGAGCCCACTTCTCTGTCTCTCTCCCCATCGCTTTATCTCTCCAATAATGACTCATCCCTGTTCCAGGACCAACGCGACCCTCGGCACTACACTGCGACTCCTCAGCCTGCACTTTCCGCCACCGCACTACTCCAAAAGGCAGCTCAAATGGGTGCGGCAGCGTCAAATGCATCTTTGCTTCGAGGTTTAGGCCTAGCACCAGCAACTTCCTTGGCACAAAACGATAGTACCCCGACACAGTGGAATAGCTGTATAAAGACAGAGAATCACCCGTTGCCTGATGATGATGGCCTTATGCTTGGAATTCCGTCTGCTGGTAATACGGGTTTTGCCAACTTGATGATGGGCTCGTCGTCGTTTGGGGGACAGCCGATGACTCGTGATCTACTTGGTCTTAGCATAGGAGGTTCCGGTGGCGGGGCCAGCGTCAGGGGTGGCCTCTCTGCTTTGCTCACCTCTTTTGGTGGGAGATTTGATGTTGCAGGATCATCGACGGGAGGGAGGAATGCTCCGGCTGAAGATTAG 1488 0.5202 MAELENPSSMAVSAASGEASFSSSGVQNEPGELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKDIRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARTRTLTIGEASEGNSNAKVAMASPPQPPLTPSTSVVSPALSIQSSVSENPIRLSPPSSNVKCLPATTVANSTPSCSTTVFASIFASSSAAPSQASSTLSSYSTMMSNLPCSDCPTTTPTLSAIEPTSLSLSPSLYLSNNDSSLFQDQRDPRHYTATPQPALSATALLQKAAQMGAAASNASLLRGLGLAPATSLAQNDSTPTQWNSCIKTENHPLPDDDGLMLGIPSAGNTGFANLMMGSSSFGGQPMTRDLLGLSIGGSGGGASVRGGLSALLTSFGGRFDVAGSSTGGRNAPAED 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01121 495 Pfam Zinc-finger of C2H2 type 66 88 - -
Accr4g01121 495 MobiDBLite consensus disorder prediction 391 410 - -
Accr4g01121 495 SMART c2h2final6 66 88 IPR013087 -
Accr4g01121 495 SMART c2h2final6 107 137 IPR013087 -
Accr4g01121 495 SMART c2h2final6 142 162 IPR013087 -
Accr4g01121 495 Gene3D Classic Zinc Finger 120 200 - -
Accr4g01121 495 FunFam protein indeterminate-domain 12-like 45 113 - -
Accr4g01121 495 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Accr4g01121 495 Gene3D Classic Zinc Finger 46 111 - -
Accr4g01121 495 MobiDBLite consensus disorder prediction 9 29 - -
Accr4g01121 495 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Accr4g01121 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Accr4g01121 495 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Accr4g01121 495 MobiDBLite consensus disorder prediction 210 233 - -
Accr4g01121 495 MobiDBLite consensus disorder prediction 1 50 - -
Accr4g01121 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 458 IPR031140 -
Accr4g01121 495 MobiDBLite consensus disorder prediction 391 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01121 Accr-Chr4 10698321 10700743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01121 13 474 IDZ Gene Family AT5G66730 51.881 1.50e-143 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr4g01121 zf-met 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01121 K25869 - qsa:O6P43_018833 621.313