Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01085 ATGGCTATCCGAGTTACTTTATCCTACTCCGGCTACTTTGCCCAGGGCCTGGCTTCTGCCGGTTGTCGTGCTGGTAATTCGCGTTGCCTCCACGAATGCTGGGTCCGATCTCGTTTGTTCGGCTCTTCCCAGAAACCTGATCGTGATCTCTCCGGAGGCGTGCGTAATTACCGTTCCGATTACGGGCGGCCTAAACCTAATTGCTGGGCTAAGGGTTCAGCATCTTTGTATTCTACCATCTCCAAAGAATTTCTGGGAGATAATTCTGATAATTCGATCATATTGGGTTTGATTTCGCTATTGAAGTCAACCGGCTCGGTATCGGCGTCTATGGCTGTATCTGGTGTTACCCCGATTAACGCCTCTTCGATTGTCCCCTTTTTAAGGGGATCGAAGAGCCTTCCTAGTAACGAGTCAACTCCCGTTCCTGCAACTCTTGAGGTCGATAAAGGAGGGACGCTATGTTACAATGGCAGTGATGATGCGAATTCAGGGTACAATCCCGAAGGTCTTGTGAAGTCAAGCTGGCTATCGCGCTTGTCAGAGGATGCGAAGGCTGTGTTTACTGCTGTGACTGTTAGTGTGCTCTTTAAGTCGTTCTTGGCTGAGCCGAGATCGATCCCCTCGGCTTCTATGTACCCAACTCTGGACGTGGGTGACCGAATTTTAGCGGAGAAGGTTTCATTCCTTTTCCGAAAGCCTGATGTTTCAGATATTGTCATTTTTAAAGCACCTCCAAGTTTACAGGAGAAAGGTTTTAGTTCGGCTGATGCATTTATTAAGAGAATTGTGGCAAAAGCTGGGGACTGTGTGGAGGTTCATGATGGAAAACTGCTGGTGAATGGTGTCGCTCAGGAAGAAGAATTCGTTTTAGAGCCCCTTTCTTATGAGATGGATCCAGTGCTTGTGCCAGAAGGTTATGTCTTTGTGTTGGGTGACAATCGTAATAATAGCTATGACTCTCATAACTGGGGTCCGCTTCCTATAAAGAACATTGTGGGTAGATCCATGTTTCGGTACTGGCCTCCTTCTAAAGTATCTGAAACTCTATATAAATCACCAAGTGCAAACAATTCTCTGGCTATTTCTTGA 1092 0.467 MAIRVTLSYSGYFAQGLASAGCRAGNSRCLHECWVRSRLFGSSQKPDRDLSGGVRNYRSDYGRPKPNCWAKGSASLYSTISKEFLGDNSDNSIILGLISLLKSTGSVSASMAVSGVTPINASSIVPFLRGSKSLPSNESTPVPATLEVDKGGTLCYNGSDDANSGYNPEGLVKSSWLSRLSEDAKAVFTAVTVSVLFKSFLAEPRSIPSASMYPTLDVGDRILAEKVSFLFRKPDVSDIVIFKAPPSLQEKGFSSADAFIKRIVAKAGDCVEVHDGKLLVNGVAQEEEFVLEPLSYEMDPVLVPEGYVFVLGDNRNNSYDSHNWGPLPIKNIVGRSMFRYWPPSKVSETLYKSPSANNSLAIS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01085 363 ProSitePatterns Signal peptidases I signature 3. 308 321 IPR019758 GO:0004252|GO:0016020
Accr4g01085 363 Gene3D Umud Fragment, subunit A 197 355 - -
Accr4g01085 363 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Accr4g01085 363 NCBIfam signal peptidase I 186 342 IPR000223 GO:0006508|GO:0008236|GO:0016020
Accr4g01085 363 PRINTS Bacterial leader peptidase 1 (S26A) family signature 259 271 IPR000223 GO:0006508|GO:0008236|GO:0016020
Accr4g01085 363 PRINTS Bacterial leader peptidase 1 (S26A) family signature 303 322 IPR000223 GO:0006508|GO:0008236|GO:0016020
Accr4g01085 363 PRINTS Bacterial leader peptidase 1 (S26A) family signature 200 216 IPR000223 GO:0006508|GO:0008236|GO:0016020
Accr4g01085 363 PANTHER SIGNAL PEPTIDASE I 173 348 IPR000223 GO:0006508|GO:0008236|GO:0016020
Accr4g01085 363 ProSitePatterns Signal peptidases I serine active site. 209 216 IPR019756 GO:0004252|GO:0016020
Accr4g01085 363 CDD S26_SPase_I 203 335 IPR019533 GO:0004252|GO:0006465
Accr4g01085 363 Pfam Signal peptidase, peptidase S26 183 341 IPR019533 GO:0004252|GO:0006465
Accr4g01085 363 FunFam Peptidase/ serine-type peptidase 209 340 - -
Accr4g01085 363 SUPERFAMILY LexA/Signal peptidase 199 347 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01085 Accr-Chr4 10294809 10297083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01085 212 342 MADS-box Gene Family AT1G29960 34.586 1.27e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01085 K03100 - zju:107420354 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01085 4 10294809 10297083 Accr4g01085 4 10294809 10297083 ECH