Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01067 ATGCCATCAAACGGTTCTGATTCCCAACAACAACAACAACAGCCATCGGAGCAGAATCAACGGCAACAGCAAACGCCAACGCAGACGCCGCCGCCAATACCGCCACTGGCGCTGCCACAGCAATGGATGCCGATACAATACCCTATGGCGGCGATGGTAATGCAGCATCACATGTTGCCACCCCAGCATTATGGGCCGCCGCCGCCACCTCAGCCCTATATGCCTTACCACCAGTACCAGCAGTTACCGCATGTAACTCACCCTCAACAGCATCAGCATCAGGGATCCACTGGCGATAACAAAACGATCTGGGTCGGCGATTTACATAATTGGATGGATGAGAATTATCTGCATCGCTGCTTCGCATCCACGGGAGAGATTTCCTCCATTAAGGTTATTCGCAGCAAGCAGACTGGCCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCCCATGCCACGGCAGAAAATGTTTTACAGAATTATGGTTCCATTGTGATGCCCAATACGGATCAACCTTTTCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCGGATAATGTTCCCGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTGCTAGTAAATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGTTATGGCTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGATTGAAATGAATGGTACGTATTGTTCTAGCAGACCAATGCGTATTGGTGCTGCAACCCCTAGGAAATCATCTGGCTACCAACAAGGAGGCCATGCGTCAAATGGAACATCCAACCAATCTGAAGCAGACTCAACAAACACAACGATATTTGTTGGAGGACTTGACCCTAATGTAACAGATGACGATCTTAGGCAGCCATTCTCACAGTATGGTGAGATAGTCTCTGTCAAGATACCTGTTGGAAAAGGATGTGGATTTGTACAATTTGTGAACAGGAACAATGCTGAAGAGGCATTGCAGAAGCTGAACGGGACAGTGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGCAGTTTAGAGGAGACTTTGGCAACCACTGGAGCGGGGCGTATTATGGAGGTCCTATTTATGATGGTTATGGATATGCTCTGCCACCACCTCCTGACCCAAGAATATATGCTGCTGCTTATGGGTCTTACCCCATGTATGGAGGCCACCAACAACAAGTAAGCTGA 1296 0.4707 MPSNGSDSQQQQQQPSEQNQRQQQTPTQTPPPIPPLALPQQWMPIQYPMAAMVMQHHMLPPQHYGPPPPPQPYMPYHQYQQLPHVTHPQQHQHQGSTGDNKTIWVGDLHNWMDENYLHRCFASTGEISSIKVIRSKQTGLSEGYGFVEFYSHATAENVLQNYGSIVMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMIEMNGTYCSSRPMRIGAATPRKSSGYQQGGHASNGTSNQSEADSTNTTIFVGGLDPNVTDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFVNRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQQFRGDFGNHWSGAYYGGPIYDGYGYALPPPPDPRIYAAAYGSYPMYGGHQQQVS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01067 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723
Accr4g01067 431 FunFam Polyadenylate-binding protein RBP47 285 403 - -
Accr4g01067 431 SUPERFAMILY RNA-binding domain, RBD 289 401 IPR035979 GO:0003676
Accr4g01067 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Accr4g01067 431 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 90 376 - -
Accr4g01067 431 MobiDBLite consensus disorder prediction 270 306 - -
Accr4g01067 431 FunFam Polyadenylate-binding protein RBP47B 100 180 - -
Accr4g01067 431 Gene3D - 100 180 IPR012677 -
Accr4g01067 431 SMART rrm1_1 102 177 IPR000504 GO:0003723
Accr4g01067 431 SMART rrm1_1 195 269 IPR000504 GO:0003723
Accr4g01067 431 SMART rrm1_1 301 368 IPR000504 GO:0003723
Accr4g01067 431 MobiDBLite consensus disorder prediction 1 39 - -
Accr4g01067 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 365 IPR000504 GO:0003723
Accr4g01067 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 168 IPR000504 GO:0003723
Accr4g01067 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 266 IPR000504 GO:0003723
Accr4g01067 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 372 IPR000504 GO:0003723
Accr4g01067 431 FunFam Polyadenylate-binding protein RBP47B 182 284 - -
Accr4g01067 431 SUPERFAMILY RNA-binding domain, RBD 66 182 IPR035979 GO:0003676
Accr4g01067 431 Gene3D - 182 287 IPR012677 -
Accr4g01067 431 MobiDBLite consensus disorder prediction 274 306 - -
Accr4g01067 431 MobiDBLite consensus disorder prediction 1 26 - -
Accr4g01067 431 CDD RRM3_NGR1_NAM8_like 299 370 - -
Accr4g01067 431 CDD RRM2_SECp43_like 193 272 - -
Accr4g01067 431 CDD RRM1_SECp43_like 102 182 - -
Accr4g01067 431 Gene3D - 288 403 IPR012677 -
Accr4g01067 431 SUPERFAMILY RNA-binding domain, RBD 177 290 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01067 Accr-Chr4 10165960 10169554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01067 195 390 Eukaryotic Initiation Factors Gene Family AT2G23350 29.469 4.21e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01067 - - gmx:100785454 656.366