LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr4g01031	ATGACAAACTATGCGTTTCTGAACGATCAGCTTTCGGCGCACACCTCAATTTTCGGTTTACGACTGTGGGTTGTGCTGGGCATATGCGTAGGAGCAGCCATAGTTATTGTTCTGTTTCTCATATCTCTCTGGTTCACCAAGCGCAACAACAATTCTTCCAACCACAACTCTTCACACAATCCTTCCATTCCAAATGTCTCCAAGGAGATCCAGGAAATCAAGATTGACCCGTCTCGTGACCCGAACCATGGAAGGTCCGACTCGTATCCGGAAGCTGAGGCTGAGGGGGATAGGGCCCAAGCCATGCTCGTTCAGCAGCAGGGGGTTGATAGCCAAAGAATTCACATAGAAATTGGTAAAGATCACCGGATTTCGTATCCTGAGAAGGGTGGTGGTTCATCTCATGGAAGTGGTGAGCAGGGTTCAATTTCTGTGCCTGAGGTTTCTCATTTGGGGTGGGGCCATTGGTACACTCTCAGAGAGCTTGAGATCTCTACCAACGGGTTTGCCGACGAGAACGTCATAGGTGAAGGTGGCTACGGGATTGTTTTTCGCGGGGTGTTGGGAGATGATACCAAAGTTGCGATTAAAAATTTGCTGAATAACAGGGGACAAGCTGAGAAGGAATTTAAGGTAGAAGTTGAAGCGATTGGACGTGTTCGGCACAAGAACTTGGTGAGGTTACTTGGATATTGTGTTGAAGGAGCCCATCGGATGCTTGTGTACGAGTATGTTAACAATGGAAACCTAGAACAGTGGCTTCACGGAGATGTTGGGCCTTCCAGCCCTCTGACATGGGAGATTCGCATGAATATAATACTTGGAACAGCAAAAGGGTTGACTTACCTTCATGAGGGTCTTGAACCTAAGGTGGTTCACCGTGATATCAAGTCAAGCAACATATTGCTAGATAAGCAATGGAATCCAAAAGTCTCTGATTTTGGCCTTGCAAAGCTCTTGGGATCAGAGAGAAGTTATGTGACAACCCGTGTAATGGGAACATTCGGGTATGTAGCTCCAGAATATGCAAGTACTGGCATGTTAAACGAAAGAAGTGATGTGTACAGCTTTGGTGTTCTTATCATGGAGATAATTTCTGGAAGAAACCCGGTAGATTACAGCCGGCCTCCTGGAGAGGTGAACGTGGTTGAGTGGCTGAAGTCCATGGTTGCTAATCGGAATGCAGAGGCGGTGCTTGATCCTAGGCTACCTGAGAAGCCTTCTTCAAGGGCACTGAAGCGTGCTTTATTAGTAGCTTTGAGATGTGTGGATTCAAATGCCCAGAAAAGGCCAAAGATGGGGCATATCATACATATGCTTGAAGCTGATGAGTTCCCTTTTCGAGATGATCGAAGAACTGGAAGGGAAGATGGACGCTCCCAGAGGATGAGCACAAGAGAAGGATTGAAGGATAAGCAAGTATGTGAATCAGGTGACAGTAGTGGATATGAAAGTAGTGTCCAAACTAGCAAGTCCATGGGCAGAAACCAAGAAACCGAAGAGCAATAA	1509	0.4659	MTNYAFLNDQLSAHTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTKRNNNSSNHNSSHNPSIPNVSKEIQEIKIDPSRDPNHGRSDSYPEAEAEGDRAQAMLVQQQGVDSQRIHIEIGKDHRISYPEKGGGSSHGSGEQGSISVPEVSHLGWGHWYTLRELEISTNGFADENVIGEGGYGIVFRGVLGDDTKVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAHRMLVYEYVNNGNLEQWLHGDVGPSSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLIMEIISGRNPVDYSRPPGEVNVVEWLKSMVANRNAEAVLDPRLPEKPSSRALKRALLVALRCVDSNAQKRPKMGHIIHMLEADEFPFRDDRRTGREDGRSQRMSTREGLKDKQVCESGDSSGYESSVQTSKSMGRNQETEEQ	502

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr4g01031	502	ProSitePatterns	Protein kinases ATP-binding region signature.	175	197	IPR017441	GO:0005524
	Accr4g01031	502	FunFam	Putative receptor-like serine/threonine-protein kinase	245	455	-	-
	Accr4g01031	502	CDD	STKc_IRAK	175	441	-	-
	Accr4g01031	502	SMART	serkin_6	169	447	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr4g01031	502	MobiDBLite	consensus disorder prediction	75	94	-	-
	Accr4g01031	502	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	291	303	IPR008271	GO:0004672\|GO:0006468
	Accr4g01031	502	MobiDBLite	consensus disorder prediction	448	474	-	-
	Accr4g01031	502	SUPERFAMILY	Protein kinase-like (PK-like)	150	441	IPR011009	-
	Accr4g01031	502	Gene3D	Phosphorylase Kinase; domain 1	145	244	-	-
	Accr4g01031	502	MobiDBLite	consensus disorder prediction	75	97	-	-
	Accr4g01031	502	MobiDBLite	consensus disorder prediction	478	495	-	-
	Accr4g01031	502	PANTHER	OS01G0323000 PROTEIN	3	465	-	-
	Accr4g01031	502	MobiDBLite	consensus disorder prediction	448	502	-	-
	Accr4g01031	502	Pfam	Protein kinase domain	170	438	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr4g01031	502	Gene3D	Transferase(Phosphotransferase) domain 1	245	452	-	-
	Accr4g01031	502	ProSiteProfiles	Protein kinase domain profile.	169	448	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr4g01031	502	FunFam	Probable serine/threonine-protein kinase At1g01540	149	244	-	-
	Accr4g01031	502	MobiDBLite	consensus disorder prediction	123	144	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr4g01031	Accr-Chr4	9793338	9795683	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr4g01031	156	467	Trihelix Transcription Factor Family	AT5G38560	44.828	3.42e-89	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Accr4g01031		Pkinase	1.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr4g01031	-		-	qsa:O6P43_016049	819.305