Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01007 ATGCTTGAAAGATTGTATAGGTTAAGACCTGACAGACTTTTGATAAAGGATCTATTTTGGTTAGTATTGGCAATTGGGTCCCTTGAAGTTGTGAGCATCTTTCTAGTTTGGTGTTTGTTAAGGACACGAGGAAAGTCGAGTATAGATCAACACAACTATCATCTTACTGCTACTGGATTTAGAAACTATAACTATTTTGAGTTGAAAGAGGCAACAAAAGGGTTCAGTGAAGAGATTGGCCGGGGAGCTGGGGGAATCGTATACAAGGGTGTATTGATAGATCAACGAGTTGCAGCAATCAAGAGACTCAACGAAGCTAGCCAAGATGAAAGTGAATTTTTGGCCGAAGTAAACATAATTGGAAGGCTTAATCACATGAACCTAATCGACATGTGGGGGTATTGTGCAGAAGGCAGGCACAGATTGCTAGTGTATGAGTACATGGAGAATGGTTCTTTGGGTGAAAATCTGGTGTCCAATAGCTCTTCACTGGATTGGAAAAAGCGGTACAACATTGCTCTGGGCACGGCCAGAGGTCTAGCATATCTACATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATAAAGCCTCAAAACATACTTTTGGACTCAGAATATCAACCTAAGGTGGCAGATTTTGGGTTGTCTAAATTGGTGAATAGAAATGATACCAACAACTTAAGCTTCTCAAGAATTAGAGGAACTAGAGGTTATATGGCACCTGAGTGGGTGTTCAATTTGCCAATTACGTCTAAGGTGGATGTGTATAGCTACGGAATTGTTGCGTTGGAGATGATAACGGGAAAAGGCCAGGTGGAGTCCCACATGGTTGATGGGGTTGAGTCGCATCACGGGAGGCTGGTGACACGGGTGAGAGAGAAAAAGAATAATAGGGGAAATGGAACGACGTCGTCATGGGTGGACCAAATCATTGATCCTACGGTTGAGGGAGATTATGAGATTGGGAAGATGGAGATGCTGGCTATGGTGGCTTTGGACTGTGTCGAGGAAGACAGGGATGCAAGACCAACGATGAGTCAAGTAGTGGAGATGCTTCAAGGTCATGAAACCGATTCTCAGTGA 1086 0.4328 MLERLYRLRPDRLLIKDLFWLVLAIGSLEVVSIFLVWCLLRTRGKSSIDQHNYHLTATGFRNYNYFELKEATKGFSEEIGRGAGGIVYKGVLIDQRVAAIKRLNEASQDESEFLAEVNIIGRLNHMNLIDMWGYCAEGRHRLLVYEYMENGSLGENLVSNSSSLDWKKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSEYQPKVADFGLSKLVNRNDTNNLSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVALEMITGKGQVESHMVDGVESHHGRLVTRVREKKNNRGNGTTSSWVDQIIDPTVEGDYEIGKMEMLAMVALDCVEEDRDARPTMSQVVEMLQGHETDSQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01007 361 SMART serkin_6 73 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g01007 361 SUPERFAMILY Protein kinase-like (PK-like) 48 354 IPR011009 -
Accr4g01007 361 ProSiteProfiles Protein kinase domain profile. 73 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g01007 361 CDD STKc_IRAK 79 355 - -
Accr4g01007 361 Pfam Protein kinase domain 76 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g01007 361 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Accr4g01007 361 PIRSF ILK 322 359 - -
Accr4g01007 361 PIRSF ILK 28 304 - -
Accr4g01007 361 FunFam S-receptor-like serine/threonine-protein kinase 42 147 - -
Accr4g01007 361 PANTHER OS07G0415500 PROTEIN 18 359 - -
Accr4g01007 361 Gene3D Phosphorylase Kinase; domain 1 40 147 - -
Accr4g01007 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Accr4g01007 361 Gene3D Transferase(Phosphotransferase) domain 1 148 361 - -
Accr4g01007 361 FunFam Serine/threonine-protein kinase 148 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01007 Accr-Chr4 9593530 9594615 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01007 63 353 Trihelix Transcription Factor Family AT5G38560 42.373 2.94e-66 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Accr4g01007 Pkinase 9.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01007 - - gmx:100783758 496.893