Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00988 ATGGCCCTGGAAGTGGAAGCTATGAAGTCACCCACCGCCGCCGGCTCCTCCTTCCCCTTCCAACCCTCCGATCTCCATCACCTGAAGCCGTGCCCCTGGGCCAAGCGCAAGCGTTCCAAGCGTGCCCGCCTTGACCAATCCTCCTGCTCCGAGGAAGAATGCCTCGACCAATCCTCCTGCTCTGAGGAAGAATACCTCGCCCTCTGCCTCATCATGCTCGCTCGCGGCTCCACCAGTTCCGCCGCCTCATATGACCGCCGTGCCTCGCCGGTTCCCAAGCTCGCTTACAAGTGTTCCGTCTGCAACAAAGCCTTCTCCTCTTACCAAGCTCTTGGCGGACACAAGGCCAGCCATCGTAAACTCGCCGGTGAGGATCACAACTCTTCTTCCAACGTCACCAGTACTGCTTCTGCCTCCACCTCTGTATCCAACGGTGGAGGTAGGCTTCACGAGTGTTCAATCTGCCATAAGTCCTTCCCTACCGGACAGGCCTTGGGCGGTCACAAGCGTTGCCACTACGAGGGTGGTGCCAGCAGCAGTGTTGCCACCACCGCCTCCGAGGGTGTGGGATCCGCCCAGCGCGGTTTCGATCTCAACATCCCTGCCTTCTCCTTGACGGTCGACGAGGAGGTGGAGAGCCCTCACCCACTAAAGAAGCCCCGCCTTTCCATTATGACCAACGACGGAATCCCTCAGCAAGTGAATTAA 708 0.5918 MALEVEAMKSPTAAGSSFPFQPSDLHHLKPCPWAKRKRSKRARLDQSSCSEEECLDQSSCSEEEYLALCLIMLARGSTSSAASYDRRASPVPKLAYKCSVCNKAFSSYQALGGHKASHRKLAGEDHNSSSNVTSTASASTSVSNGGGRLHECSICHKSFPTGQALGGHKRCHYEGGASSSVATTASEGVGSAQRGFDLNIPAFSLTVDEEVESPHPLKKPRLSIMTNDGIPQQVN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00988 235 MobiDBLite consensus disorder prediction 117 144 - -
Accr4g00988 235 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Accr4g00988 235 SMART c2h2final6 96 118 IPR013087 -
Accr4g00988 235 SMART c2h2final6 150 172 IPR013087 -
Accr4g00988 235 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 38 202 IPR044653 GO:0003700
Accr4g00988 235 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Accr4g00988 235 SUPERFAMILY beta-beta-alpha zinc fingers 96 172 IPR036236 -
Accr4g00988 235 MobiDBLite consensus disorder prediction 1 28 - -
Accr4g00988 235 Pfam C2H2-type zinc finger 95 120 - -
Accr4g00988 235 Pfam C2H2-type zinc finger 150 173 - -
Accr4g00988 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Accr4g00988 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 172 IPR013087 -
Accr4g00988 235 MobiDBLite consensus disorder prediction 126 144 - -
Accr4g00988 235 Gene3D Classic Zinc Finger 94 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00988 Accr-Chr4 9376801 9377508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00988 3 224 C2H2 Transcription Factor Family AT1G27730 46.531 4.93e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr4g00988 zf-C2H2_6 1.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00988 - - qsa:O6P43_015998 241.891