Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00970 ATGACTTTGCATCGGCCGTCTTCCGGTGGTGGCGCCGTGGTGCTCGATTTAGAAACTGCCGTGAAAGGCGGCGTTTTGGACGGCAAAGCTGCTCTGCCCGATAATGGTTGCGGCGACGGTGACAAAATAGATCTGAAGGTGTTGATTGAAGTGATGGAGTCAGTTGAAGTGCCCTCTGTGTTCGTCTGTCCAATCTCATTAGAGCCCATGCGAGAGCCTGTGACCATTTGCACGGGTCAGACCTATGACAGATCTAACATCCTCAAATGGTTCGCTCTGGGTCATAATACTTGCCCCACAACGATGCAGGAGCTTTGGGACGATTCAGTGACGCTGAACAGGACTCTCGGTCAATTAATCCATAGTTGGTTCTCGCAGAAGTACCTCTCATTGAATAAGCAGTTCCAGGATGTGCAGGGAAGAGCCCTGGAGCTCCTAGAGAAACTCAAGAAGGTGAAGGGTCAAGCCAGAGTTCAAGCCCTTCGAGATCTCAGGCAGATTGTTACTACCCATGCGTCCACAAGGAAGACAGTTGTAGAAAATGGAGGGCTTGCTTTAATTTCTTCTTTACTGGGTCCTTTCACTTCCCACGCAGTTGGGTCAGAAGCAATTGGGATTCTAGTGAACTTGGATTTGAACTCAGAGTCGAAGAGAAATCTGATGCTTCCGGCGAAGATATCTTTGTTGGTCGATGTTATGAACGAGGGAACGATTGAGACCAAGATGAACTGTGCCAAATTGATTGAAGTGTTGTTGATGGAAGTGAATGAATCGGAGACGGAAATTTTGTCAAGCTTGAGTCTTTTGGTCGGATTATTGAGGCTAGTGAGGGATAAGAAACACCCAAGTGGGGTCTTGACAGGACTCATGTTACTGAAGACAATCTGTTCCCATGAATCAGTGAGAAGCTCCATAGTAAGCCTAGGAGCAGTTGCTCAGTTGATTGAGCTTCTTCCAAGTTTAAACCACGATTGTCTAGAGATAGCTCTGTCCATTCTAGAGGTATTGTCAACTATTCCAGAGGGAAGACTGGCATTGAAAGAGAGCCCAAACATTATACCAAATGTGGTGAAGTTAATGATGAGAGTATCAGAGAGTAGCACTCAATTTGCGTTGTCAATATTGTGGGCTATCTACAAGCTTGCCCCTGAAGAATGTGCTTCACAGGCGGTGGAGGCTGGTTTGGCTCCCAAGTTGCTGCTTGTAATTCAGAGTGGTTGCAACCCAGTGTTGAAGCAGATGTCTACTGAGTTCTTAAAAATGTGCAGTCTTAATTATTCCACTAGTCTTTTGATTTCTAAATGTATGCTCACCAGAACAATACGATGA 1329 0.4597 MTLHRPSSGGGAVVLDLETAVKGGVLDGKAALPDNGCGDGDKIDLKVLIEVMESVEVPSVFVCPISLEPMREPVTICTGQTYDRSNILKWFALGHNTCPTTMQELWDDSVTLNRTLGQLIHSWFSQKYLSLNKQFQDVQGRALELLEKLKKVKGQARVQALRDLRQIVTTHASTRKTVVENGGLALISSLLGPFTSHAVGSEAIGILVNLDLNSESKRNLMLPAKISLLVDVMNEGTIETKMNCAKLIEVLLMEVNESETEILSSLSLLVGLLRLVRDKKHPSGVLTGLMLLKTICSHESVRSSIVSLGAVAQLIELLPSLNHDCLEIALSILEVLSTIPEGRLALKESPNIIPNVVKLMMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTEFLKMCSLNYSTSLLISKCMLTRTIR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00970 442 SUPERFAMILY RING/U-box 54 127 - -
Accr4g00970 442 CDD RING-Ubox_PUB 58 110 IPR045210 -
Accr4g00970 442 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Accr4g00970 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 133 IPR013083 -
Accr4g00970 442 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Accr4g00970 442 SUPERFAMILY ARM repeat 136 427 IPR016024 -
Accr4g00970 442 PANTHER WDSAM1 PROTEIN 54 429 IPR045185 GO:0061630
Accr4g00970 442 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Accr4g00970 442 Gene3D - 134 433 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00970 Accr-Chr4 9229367 9230695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00970 1 442 U-box Gene Family AT5G65920 57.930 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00970 - - mof:131162315 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00970 4 9229367 9230695 Accr4g00970 4 9229367 9230695 ECH