Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00956 ATGGGAAGAGCTCCTTGCTGCGACAAAGCGAGCGTGAAGAGAGGCCCTTGGTCCCCTGAAGAAGATGCCAAGCTCAAGAGCTATATTGAACAACACGGCACCGGCGGTAACTGGATCGCTTTGCCCCAAAAGATCGGGTTGAAGAGATGTGGGAAGAGTTGCCGGCTAAGGTGGCTGAACTACCTTCGGCCCAATATAAAGCATGGGGGTTTCTCCGAGGAAGAAGACAACATCATATGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATTGCTGCTCAATTGCCAGGAAGAACAGATAATGATATAAAGAACTACTGGAACACAAGGTTGAAGAAGAAGCTTCTGGGAAAGCACCGTAAAGAACATCAGGCACGTTCTAGGGGCAAGAGTAAGCAGGGAATTATGAATAAGAGTAGTATTGTTGGGATCAATTCATCGATCCTTCCAGAAGAAAATAGTACTGGCCATGGTCAGGTTCTTGAGGCTCATCAACAAAACCCGTATTGGCCTTGTTACCCCCAGATGATGATGCCTGTGATACCGCCCATGATGTCATACTCAGACCAAGTCCAAGGTTTCAATGACCAGGATTCCATTAGAAAACTTCTTATCAAGCTTGGAGGAACCTTTTCTTACCAGCCTGAAGGGTTCAATTTTCAATTACCAGATGCTACTAGTACTGATCCCTCCGCACAATCACCAATTTATCAAGTTTCTTCTTCTGCTTCTGCGTCTGCTTCTGCAAGTGCTATGAACAATGATAACCAACTAAAATTCCCTCAGCTCCCTTACCAATCTGGACTTAGTAGTAACTTGGTGCAAGGAAGCAGCACTTTCAATCAAGCACATGAGGAAATGTCTGCGTCTTATCCATCTAGCGAAATGTCTGCATCTTATCCATCTAGCCTAGATGGCCTGGAATATTTTATCAATCATTACGATAAGATAGACACTACGAGCTCGTGTGACACCAACAACATAGTTTGTCCTCCTTTACTTTCCTCCGATTATGAACAATGTATGCCAACGCCTCAGGAATTTGCTTTTCAGGAGTTGAGGTATCCAGGCGCCCACTAG 1086 0.454 MGRAPCCDKASVKRGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEHQARSRGKSKQGIMNKSSIVGINSSILPEENSTGHGQVLEAHQQNPYWPCYPQMMMPVIPPMMSYSDQVQGFNDQDSIRKLLIKLGGTFSYQPEGFNFQLPDATSTDPSAQSPIYQVSSSASASASASAMNNDNQLKFPQLPYQSGLSSNLVQGSSTFNQAHEEMSASYPSSEMSASYPSSLDGLEYFINHYDKIDTTSSCDTNNIVCPPLLSSDYEQCMPTPQEFAFQELRYPGAH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00956 361 Gene3D - 70 142 - -
Accr4g00956 361 CDD SANT 71 113 IPR001005 -
Accr4g00956 361 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Accr4g00956 361 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Accr4g00956 361 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Accr4g00956 361 Gene3D - 7 68 - -
Accr4g00956 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Accr4g00956 361 FunFam Transcription factor RAX3 7 68 - -
Accr4g00956 361 SMART sant 13 64 IPR001005 -
Accr4g00956 361 SMART sant 67 115 IPR001005 -
Accr4g00956 361 FunFam Transcription factor RAX3 70 143 - -
Accr4g00956 361 CDD SANT 16 62 IPR001005 -
Accr4g00956 361 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Accr4g00956 361 MobiDBLite consensus disorder prediction 119 138 - -
Accr4g00956 361 PANTHER OS09G0431300 PROTEIN 1 298 - -
Accr4g00956 361 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Accr4g00956 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00956 Accr-Chr4 9107189 9108503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00956 1 208 MYB Transcription Factor Family AT3G49690 61.058 2.96e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr4g00956 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00956 K09422 - gmx:778079 342.813