Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00954 ATGGAGGGATATAGTAACCAGGTGAGCGTAAATACAGGTTCAAGGCCGAATTTCTTGTACTCGTTTGCTACAGTTGGAGGTCCAAGCGTGGGAAACCAAAACCATCATCAGTCGTCGCCCAGCACTAACTTCCATCTTCAGTCAGGTGGATCGGAATGCTACGAATCTGTGAAAAACGAAGCCAACACCTCCAATAATCATCACTCCCAGATTTTCCACTATCATCCTTTGATCAGTAGTCATGGAGGAAGCCAAACCCCTAACGAAGAACTTGAATCTCTTAAAGCTAAAATCATGGCTCATCCTCACTATTCCAACCTTCTGGAAGCTTACATGAACTGCCACAAGGTAGGAGCTCCGCCGGAGGTGGTGGCGCATCTCACTGCGGCAAAGCAAGAGTTCGAGGCACGGCAGCTATCTTCGGTCAGATCCAGGGAAACTTGCAAGGACCCAGAACTTGACCGATTTATGGAAGCTTACTATAACCTTCTGGTAAAGTATGGGGAGGAATTAACAAGGCCATTTCAAGATGCAATGGATTTCATACGCAACATCGAAGGTCAGCTTAATATGCTTTGTGATGGACCTGTGCGCATTTTCCCTGAAAAGGGCGAGGGCCGTGCGGATTCTTCTGAAGAGGATCAAGAGAATAGTGGAGGAGAAGCAGAAATGGCCGGAATTGATCCTCGAGCTGAAGATCGTGACCTTAAGAACCACTTGTTAAGAAAGTATAGTGGGTGCTTGGGTAGCCTGAAGCAAGAACTTTCAAAGACAAAGAAGAAAGGAAAACTGCCAAAAGATGCCAGGCAAAAGCTTCTTAACTGGTGGGAATTACACTACAAATGGCCCTATCCTTCGGAATCAGAGAAGCTGGCATTGGCAGAATCAACAGGGTTAGACCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGCGACACTGGAAGCCATCAGAAGACATGCAATTTATGGTTATGGAAGGCCTTCATCCACAGAATCCCCTGCACTATATGGACGCCCACTACATGCCTGATCCTCACTACCGTATGGGACCATGA 1062 0.4633 MEGYSNQVSVNTGSRPNFLYSFATVGGPSVGNQNHHQSSPSTNFHLQSGGSECYESVKNEANTSNNHHSQIFHYHPLISSHGGSQTPNEELESLKAKIMAHPHYSNLLEAYMNCHKVGAPPEVVAHLTAAKQEFEARQLSSVRSRETCKDPELDRFMEAYYNLLVKYGEELTRPFQDAMDFIRNIEGQLNMLCDGPVRIFPEKGEGRADSSEEDQENSGGEAEMAGIDPRAEDRDLKNHLLRKYSGCLGSLKQELSKTKKKGKLPKDARQKLLNWWELHYKWPYPSESEKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMEGLHPQNPLHYMDAHYMPDPHYRMGP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00954 353 Pfam KNOX2 domain 147 193 IPR005541 GO:0003677|GO:0005634
Accr4g00954 353 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677|GO:0006355
Accr4g00954 353 SMART KNOX1_2 92 136 IPR005540 GO:0003677|GO:0005634
Accr4g00954 353 CDD homeodomain 267 319 IPR001356 GO:0003677
Accr4g00954 353 Pfam KNOX1 domain 94 135 IPR005540 GO:0003677|GO:0005634
Accr4g00954 353 SMART HOX_1 257 322 IPR001356 GO:0003677
Accr4g00954 353 Gene3D - 260 322 - -
Accr4g00954 353 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677
Accr4g00954 353 MobiDBLite consensus disorder prediction 30 49 - -
Accr4g00954 353 SMART KNOX2_2 143 194 IPR005541 GO:0003677|GO:0005634
Accr4g00954 353 ProSitePatterns 'Homeobox' domain signature. 293 316 IPR017970 GO:0000981|GO:0006355
Accr4g00954 353 ProSiteProfiles ELK domain profile. 235 255 IPR005539 GO:0003677
Accr4g00954 353 SUPERFAMILY Homeodomain-like 257 329 IPR009057 -
Accr4g00954 353 MobiDBLite consensus disorder prediction 202 230 - -
Accr4g00954 353 FunFam Homeobox protein knotted-1-like 2 260 322 - -
Accr4g00954 353 SMART ELK_2 235 256 IPR005539 GO:0003677
Accr4g00954 353 Pfam ELK domain 235 256 IPR005539 GO:0003677
Accr4g00954 353 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00954 Accr-Chr4 9080486 9083677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00954 56 353 Homeobox Transcription Factor Family AT4G08150 65.246 6.56e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr4g00954 KNOX2 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00954 - - gmx:100807602 474.167