Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00941 ATGGATGGGATATCTATGCTTTCTGGCTCTCAAGGGCATGGCGCATCTGTAAGCAATGTGAATGTCCACCTGATAAATCCTGGAATTATTGATTCTAATGCATTTTTTTCATCCAAAGGAAAGAACATTATTGGATATGCCTCACAGGGAACTTCTTCATGTCCCGTAAATAACAGTGGGTTTCAAGAGCAATCAGCTTCCCCTGCTTCACTTTCTGGCATTCTTGCTGCTAGAATTGGTCATCAAGAAAATTTAGAGAAATCACAAGTTTTATCTCCTTTATTCGGTTCACTGGACTCATTGGGACCTTATATGTTAGAAAATTGGTCATATGCTCCAAGCCATTTGCCTTTAACTCATGGCTACAACAACAATATGCCTAATGGAAACTTGGATTCAAATGGATGGGCTTCATCATCAAATGTTACAATCTTGAGCAGCCTTGCTTATGGTTCATCTAATTTCTGTAATGAACCTGTATTAAGCCTTGCAACTTCTCCAACAACAGTCCAGTTCTCAGAAGTTAGTTGTTCTGATCAAGTTACCCGTTGCTTCAGTAAAACAAGGTCAGGCTTGGAACTTGGCTCTTGCAGCAACAGGGAGCCTGCCATGAGTTTGAACAACTCTGCTGGTAGACACTTTCATTCTTCTCAAACCATGTTAGGATCAAGATATCTTACTGGAATTCAAGAAATACTCGCTCAACTTGCAAGATTCTCACTTGAGAATCTTGAACAGGTAAGATATTCACAATCAAGTTCTATGTTCAATCTCAACATGGAAGCTCCTTTGCCAATACATGCAGCTGAATCAAACAAGTCCGAGCTGCTGACACTCTTAGAACTGGTGGACAGCCGATATAATCAGTGTCTGGATGAGATCCATACTGTGGTTTCTGCATTCCATGCTGCTACAGAGTTGGACCCACGAGTTCATGTTCATTTTGCTCTTCAAACAATCTTTCTCTTATACAAGAACTTGCGAAACAGGATCAGCAATTACATTCTTGCCATGGGGCCACCGGATTTGGACAGTTCATGCGCAGTGGACAAGGAAGGATCTATTGATCCTTTACTCATTCATAAGCAATTGTCTCTCCAAACGTTGAAACGAAAAGATCATCAATTATGGAGGCCCCCAAGGGGTTTGCCGGAAAACTCTGTCTCAATCTTACGAGCCTGGATGTTTCAGAACTTTCTCCATCCGTATCCTAAAGATTCGGAGAAGCATTTACTTGCATTAAAAGCAGGGTTGACCAGAAACCAGGTATCCAACTGGTTTATAAATGCTCGTGTTCGGCTATGGAAACCCATGATTGAGGAAATGTACGCTGAACTGAATCGTAAAAGAAAGGCTAGTCGAAATGAAGGAGAAGCTGAGAGCAGCAGTCATGGAAGGCTTGGGAGATAA 1410 0.4163 MDGISMLSGSQGHGASVSNVNVHLINPGIIDSNAFFSSKGKNIIGYASQGTSSCPVNNSGFQEQSASPASLSGILAARIGHQENLEKSQVLSPLFGSLDSLGPYMLENWSYAPSHLPLTHGYNNNMPNGNLDSNGWASSSNVTILSSLAYGSSNFCNEPVLSLATSPTTVQFSEVSCSDQVTRCFSKTRSGLELGSCSNREPAMSLNNSAGRHFHSSQTMLGSRYLTGIQEILAQLARFSLENLEQVRYSQSSSMFNLNMEAPLPIHAAESNKSELLTLLELVDSRYNQCLDEIHTVVSAFHAATELDPRVHVHFALQTIFLLYKNLRNRISNYILAMGPPDLDSSCAVDKEGSIDPLLIHKQLSLQTLKRKDHQLWRPPRGLPENSVSILRAWMFQNFLHPYPKDSEKHLLALKAGLTRNQVSNWFINARVRLWKPMIEEMYAELNRKRKASRNEGEAESSSHGRLGR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00941 469 Pfam Associated with HOX 220 332 IPR006563 -
Accr4g00941 469 ProSiteProfiles 'Homeobox' domain profile. 396 437 IPR001356 GO:0003677
Accr4g00941 469 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 139 459 - -
Accr4g00941 469 SMART prehox3 214 333 IPR006563 -
Accr4g00941 469 Gene3D - 381 458 - -
Accr4g00941 469 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
Accr4g00941 469 SMART HOX_1 377 441 IPR001356 GO:0003677
Accr4g00941 469 MobiDBLite consensus disorder prediction 449 469 - -
Accr4g00941 469 SUPERFAMILY Homeodomain-like 380 445 IPR009057 -
Accr4g00941 469 CDD homeodomain 377 438 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00941 Accr-Chr4 8960959 8963337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00941 157 450 Homeobox Transcription Factor Family AT4G32980 49.201 1.83e-91 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Accr4g00941 POX 9.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00941 - - pcin:129318985 708.753