Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00940 ATGGCTGGCCAAAATTCAAGTGTATTTTATGAAACTCCACAAAATCCAACGCCCAACTCACTCATCCAGTGCTATTCATTGAACCTCAGTGACCAAACTCGTATCATGGATGGGATATCTATGCTTTCTGGCTCTCAAGGGCATGGCGCATCTGTAAGCAATGTGAATGTCCACCTGATAAATCCTGGAATTATTGATTCTAATGCATTTTTTTCATCCAAAGGAAAGAACATTATTGGATATGCCTCACAGGGAACTTCTTCATGTCCCGTAAATAACAGTGGGTTTCAAGAGCAATCAGCTTCCCCTGCTTCACTTTCTGGCATTCTTGCTGCTAGAATTGGTCATCAAGAAAATTTAGAGAAATCACAAGTTTTATCTCCTTTATTCGGTTCACTGGACTCATTGGGACCTTATATGTTAGAAAATTGGTCATATGCTCCAAGCCATTTGCCTTTAACTCATGGCTACAACAACAATATGCCTAATGGAAACTTGGATTCAAATGGATGGGCTTCATCATCAAATGTTACAATCTTGAGCAGCCTTGCTTATGGTTCATCTAATTTCTGTAATGAACCTGTATTAAGCCTTGCAACTTCTCCAACAACAGTCCAGTTCTCAGAAGTTAGTTGTTCTGATCAAGTTACCCGTTGCTTCAGTAAAACAAGGTCAGGCTTGGAACTTGGCTCTTGCAGCAACAGGGAGCCTGCCATGAGTTTGAACAACTCTGCTGGTAGACACTTTCATTCTTCTCAAACCATGTTAGGATCAAGATATCTTACTGGAATTCAAGAAATACTCGCTCAACTTGCAAGATTCTCACTTGAGAATCTTGAACAGGTAAGATATTCACAATCAAGTTCTATGTTCAATCTCAACATGGAAGCTCCTTTGCCAATACATGCAGCTGAATCAAACAAGTCCGAGCTGCTGACACTCTTAGAACTGGTGGACAGCCGATATAATCAGTGTCTGGATGAGATCCATACTGTGGTTTCTGCATTCCATGCTGCTACAGAGTTGGACCCACGAGTTCATGTTCATTTTGCTCTTCAAACAATCTTTCTCTTATACAAGAACTTGCGAAACAGGATCAGCAATTACATTCTTGCCATGGGGCCACCGGATTTGGACAGTTCATGCGCAGTGGACAAGGAAGGATCTATTGATCCTTTACTCATTCATAAGCAATTGTCTCTCCAAACGTTGAAACGAAAAGATCATCAATTATGGAGGCCCCCAAGGGGTTTGCCGGAAAACTCTGTCTCAATCTTACGAGCCTGGATGTTTCAGAACTTTCTCCATCCGTATCCTAAAGATTCGGAGAAGCATTTACTTGCATTAAAAGCAGGGTTGACCAGAAACCAGGTATCCAACTGGTTTATAAATGCTCGTGTTCGGCTATGGAAACCCATGATTGAGGAAATGTACGCTGAACTGAATCGTAAAAGAAAGGCTAGTCGAAATGAAGGAGAAGCTGAGAGCAGCAGTCATGGAAGGCTTGGGAGATAA 1515 0.4165 MAGQNSSVFYETPQNPTPNSLIQCYSLNLSDQTRIMDGISMLSGSQGHGASVSNVNVHLINPGIIDSNAFFSSKGKNIIGYASQGTSSCPVNNSGFQEQSASPASLSGILAARIGHQENLEKSQVLSPLFGSLDSLGPYMLENWSYAPSHLPLTHGYNNNMPNGNLDSNGWASSSNVTILSSLAYGSSNFCNEPVLSLATSPTTVQFSEVSCSDQVTRCFSKTRSGLELGSCSNREPAMSLNNSAGRHFHSSQTMLGSRYLTGIQEILAQLARFSLENLEQVRYSQSSSMFNLNMEAPLPIHAAESNKSELLTLLELVDSRYNQCLDEIHTVVSAFHAATELDPRVHVHFALQTIFLLYKNLRNRISNYILAMGPPDLDSSCAVDKEGSIDPLLIHKQLSLQTLKRKDHQLWRPPRGLPENSVSILRAWMFQNFLHPYPKDSEKHLLALKAGLTRNQVSNWFINARVRLWKPMIEEMYAELNRKRKASRNEGEAESSSHGRLGR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00940 504 ProSiteProfiles 'Homeobox' domain profile. 431 472 IPR001356 GO:0003677
Accr4g00940 504 MobiDBLite consensus disorder prediction 484 504 - -
Accr4g00940 504 SUPERFAMILY Homeodomain-like 415 480 IPR009057 -
Accr4g00940 504 SMART prehox3 249 368 IPR006563 -
Accr4g00940 504 Pfam Associated with HOX 255 367 IPR006563 -
Accr4g00940 504 Pfam Homeobox KN domain 429 468 IPR008422 GO:0003677|GO:0006355
Accr4g00940 504 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 166 494 - -
Accr4g00940 504 Gene3D - 416 493 - -
Accr4g00940 504 SMART HOX_1 412 476 IPR001356 GO:0003677
Accr4g00940 504 CDD homeodomain 412 473 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00940 Accr-Chr4 8960854 8963337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00940 192 485 Homeobox Transcription Factor Family AT4G32980 49.201 3.71e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Accr4g00940 POX 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00940 - - pcin:129318985 759.985