Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00896 ATGGATCCGCAGAGACGGAAGAAGGAACCTTGCAGAGGAGCCTGGACACCCGAGGAAGACAAGAAATTGGTTCAAGTCATTGAGTTACATGGCCCTAAGAGGTGGAAGATTATATCAGCTAAAGCAGGTCTAAATCGATGTGGCAAGAGTTGCAGACTAAGATGGTTAAATTACCTTAGACCCAATATCAAGAGAGGCAATATATCAGAACAAGAAGAGGACTTGATACTCAGGCTCCACAAACTCCTAGGCAACAGGTGGTCTTTGATAGCTGGAAGACTCCCAGGTCGAACTGATAATGAGATTAAGAATTACTGGAACTCTCATTTGAGCAAAAAGATAAGTCCAAGGAAACAAAAGAACAGAGGTTTTAAAAAAGATTCCACGGCGGAGAAAGCTGCAGTAATTAGTAGCGATGAAGAACAGGGGCACACGGTGGTGGTGGAGAAATCGAAGCCTGGCTTCGTTGAAAACCATAATGAATTGTTCATTATTCCTTGTGGCAGCGAAGGACCCCTAAATTTGGAGTGGGTGAGCAAGTTTCTTGAAATGGACGAAGCTAATTGGTTTGGATCTGCAGATCCGTGA 588 0.4388 MDPQRRKKEPCRGAWTPEEDKKLVQVIELHGPKRWKIISAKAGLNRCGKSCRLRWLNYLRPNIKRGNISEQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKISPRKQKNRGFKKDSTAEKAAVISSDEEQGHTVVVEKSKPGFVENHNELFIIPCGSEGPLNLEWVSKFLEMDEANWFGSADP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00896 195 FunFam MYB-related transcription factor 11 64 - -
Accr4g00896 195 Gene3D - 12 64 - -
Accr4g00896 195 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Accr4g00896 195 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Accr4g00896 195 CDD SANT 69 110 IPR001005 -
Accr4g00896 195 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Accr4g00896 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Accr4g00896 195 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Accr4g00896 195 Gene3D - 68 136 - -
Accr4g00896 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 59 IPR017930 -
Accr4g00896 195 CDD SANT 14 59 IPR001005 -
Accr4g00896 195 SUPERFAMILY Homeodomain-like 12 106 IPR009057 -
Accr4g00896 195 SMART sant 64 112 IPR001005 -
Accr4g00896 195 SMART sant 11 61 IPR001005 -
Accr4g00896 195 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 4 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00896 Accr-Chr4 8493363 8494116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00896 1 134 MYB Transcription Factor Family AT5G40330 58.955 5.51e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr4g00896 Myb_DNA-binding 4.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00896 K09422 - qsu:111997867 254.603