Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00879 ATGGCTTCTCCGAATTCTGCGACAACTGAGATGAGTTATCATGATCAGTGTTTAAAGTACAAAGGCGTGAGGAAGCGAAAATGGGGGAAATGGGTATCTGAAATCAGACTACCCAACAGCCGCGAACGCATATGGCTTGGCTCTTATGATTCAGCAGAAAAAGCAGCTCGAGCTTTTGATGCTGCACTCTTGTGTCTACGTGGCGATCGTGCCAATTTCAACTTCCCTGACACTCCTTTCCTCTTTCATCTTCCTCATCATCCTCAACCTCTCACCCATCACCAGATTCAGCTCCTTGCTTCTTCCTTCGCCAATCAGCTCCACCACCAGCACCAGCCGCGGGAGCCACCCCATGAAACAGAACCATCTGCAGAATTTCATTCTGTAAGTCCTGTGTCAGTTTCCGAGACCGGTTCTAGTTCTTGTACTTCACTTTCCTCTTGTATGCAAGTGGACGTGGAGGAGCACGGTGGTGACAGCACCATAGATTGGTCATTTTTGAACTCGCTAGATTCCGATGACCTAGGTACCGCCATTGACTGTGGACTCTATTCTGAGTTAGACTACTTCCAGTTTGGTGAGTCGACGACGTCGTCTGAGTTATCTCTCATACCCCAAGACGTGCCCTTCGACTACAGTAATGCTCAAGAGAATCAATACGAAGACGCTTATTCTCACAATTCATTCCTTTGGAACTTCGGATATGATTGTTCATAG 717 0.4728 MASPNSATTEMSYHDQCLKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALLCLRGDRANFNFPDTPFLFHLPHHPQPLTHHQIQLLASSFANQLHHQHQPREPPHETEPSAEFHSVSPVSVSETGSSSCTSLSSCMQVDVEEHGGDSTIDWSFLNSLDSDDLGTAIDCGLYSELDYFQFGESTTSSELSLIPQDVPFDYSNAQENQYEDAYSHNSFLWNFGYDCS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00879 238 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Accr4g00879 238 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Accr4g00879 238 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Accr4g00879 238 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Accr4g00879 238 MobiDBLite consensus disorder prediction 106 138 - -
Accr4g00879 238 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Accr4g00879 238 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Accr4g00879 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 154 - -
Accr4g00879 238 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Accr4g00879 238 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
Accr4g00879 238 FunFam Ethylene-responsive transcription factor 2 19 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00879 Accr-Chr4 8303422 8304138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00879 19 233 AP2-EREBP Transcription Factor Family AT1G19210 43.056 1.46e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr4g00879 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00879 - - pcin:129318518 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00879 4 8303422 8304138 Accr4g00879 4 8303422 8304138 ECH