Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00871 ATGGAATCGGAGGATTCGGTGAAACTGCAATTGGAAGAATTGCAGAAACTTTTGGGGAAGAAGCAAAAGTTCGAGGACGCTGTCTTCTCTCTCAAATCCCTCCTTCAACAGAATTATCCTTCTGCTTCTCCTTCTCTCCGAAAATCCTTTTATACGGCTATCTGCCGAGTTGCTACTGTATTGAAGACCAGGTATACCGCACCGGGTTTCTGGAATGCTGGGCTGGGGCTTTTTGAACAGGCTGAATTACTTGTTTCTGATCCATCTGAGAAGGAACACTTGAAGGGTTGCATTTCTCAGGCGAGGGAAGAGTTGCATCTAGAGGACAATCCGACACAGGCTGCACAATCAGCTCAAAATCCTGTGAATGCAGGTTATCTTTTTGAGGGACACCTTACTGTAGATCCAGAGCCACCTCAGCCTCAATGGCTGGTGCAATCAAACCTCTTGACAACAGCTGCTACGCTATTTGATGCTGAATCATCTCAAGGTTTAGCGGCAGATGATACTTCACAGGAAAATGCTGCAAATATGCTTCAGGATCTTCTAAATAGATTAGAAGATGCCGTGCCACTGATGCTGAGTGATGGTCCAGCACTTCCAAAAGTCCCTCCTGCTAGCAAAGAAGTTGTGGCAAAACTTCCGGTCATTACTCTTACAGAGGAAATTCTGGCTAAGCTAGGGAAAGATGCAGAGTGTGCAATTTGCAAGGAAAACTTGGTTCTAAATGACAAAATGCAGGAGTTGCCATGCAAGCACAAATTCCACCCAGCTTGTCTAAAGCCATGGCTGGATGAGCATAATTCATGCCCTATTTGTCGGTATGAGCTACAAACTGATGACCACGCCTATGAGAGCTGGAAGGAACGTGAGAAGGAAGCAGAAGAAGAGAGGAAGGGTGCTGAAAATGCTGTTCGTGGCGGCGAATATATGTATGTTTAG 942 0.4565 MESEDSVKLQLEELQKLLGKKQKFEDAVFSLKSLLQQNYPSASPSLRKSFYTAICRVATVLKTRYTAPGFWNAGLGLFEQAELLVSDPSEKEHLKGCISQAREELHLEDNPTQAAQSAQNPVNAGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFDAESSQGLAADDTSQENAANMLQDLLNRLEDAVPLMLSDGPALPKVPPASKEVVAKLPVITLTEEILAKLGKDAECAICKENLVLNDKMQELPCKHKFHPACLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAVRGGEYMYV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00871 313 Coils Coil 284 304 - -
Accr4g00871 313 MobiDBLite consensus disorder prediction 292 313 - -
Accr4g00871 313 SUPERFAMILY RING/U-box 227 280 - -
Accr4g00871 313 FunFam E3 ubiquitin-protein ligase RNF181 196 280 - -
Accr4g00871 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 131 277 - -
Accr4g00871 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Accr4g00871 313 Pfam Ring finger domain 232 274 IPR001841 -
Accr4g00871 313 CDD RING-H2_RNF126-like 232 274 - -
Accr4g00871 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 280 IPR013083 -
Accr4g00871 313 SMART ring_2 233 273 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00871 Accr-Chr4 8234440 8236548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00871 7 313 C3H Transcription Factor Family AT5G20910 64.610 1.34e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00871 K16274 - gmx:100800189 507.679