Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00840 ATGAGTAGTCTGGTTGAGAGGCTTCGAGCAAGATCAGATCGCAAGCCCATCTACAGCATTGATGAATCAGACGATGACGCTGATATTTTGCCCGGAAAACACGAGCCAACTCAGGAAAAGTTTGAGAGGATAGTCAGGAGCGATACGAAAGAAAATTGTTGCCAAGCTTGTGGAGAAAATGGAGAACTTTTGAACTGTGAAACTTGCACTTATGCCTATCATCCTAGGTGTTTACTTCCACCACTTAGAGCTCCCGTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCTCTTAATGATATCGATAAGATATTAGACTGTGAGATGCGCCCTACTTTAGCTGACGACAGTGATTCCACCAAACTGGGGTCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATATCTCCATTGCTCATGGGTGCCAGAGAAGGAGTTTCTGAAAGCTTACAAGACACATCCTCGCCTGAAGACAAAAGTAAATAACTTCCATCGTCAAATGTCATCAGTTAATACTTCTGATGAAGACTTTGTTGCAATTCGACCTGAATGGACCACTATTGATCGGATTATTGCTTGCAGGGGTGATGATGAAAAGGAATATCTTGTTAAATGGAGGGAGCTTTCGTATGATGAATGCTCTTGGGAGTTTGAGTCTGATATTTCTGAGTTTCAGGCAGAAATTGAAAGATTCAACAGATTTCAGTCTAGGTCTAGGAAACTTGTTATTTCTAATAAGCAGAAAGGCAGTGTTAGGGATGGTGCAGAATTGATGAGGCATCAGAAAGAATTTCATCAGTGTGAACATAGTCCTGAATTTCTTTCAGGGGGTACTCTACATCCATATCAACTTGAAGGCTTAAACTTTTTACGTTTCTCATGGTCCAAGCAAACTCATGTTATACTCGCTGATGAAATGGGACTTGGCAAAACCATACAGAGCATTGCTTTCTTGGCGTCACTTTTTCAAGAGAACATTTCTCCACATTTGGTGGTTGCTCCACTTTCAACACTGCGAAACTGGGAGCGTGAATTTGCAACATGGGCGCCACAAATGAATGTTGTTATGTATGTTGGATCTTCTCAAGCCCGTGCTGTTATACGTGAGTATGAATTTTATTTTCCAAAGAGCCAGAAGAAGTTAAAAAAAAAGAAATCTGGTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTCTTGACATCATATGAGATGATCAACCTTGACTCAGCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAACTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTTTTGACTGGGACTCCTCTGCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAGGAATTTCAGGAAGAGTTCAAGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCACAAAATGTTGGCCCCCCATCTTCTTAGAAGGGTCAAGAAAGACGTCATGAAGGAATTGCCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCGAACAGAAAGAATATTATAAGGCTATTTTGACGCGTAATTATCAGATATTAACTCGTCGTGGTGGAGCTCAGATTTCTCTTATCAATGTTGTTATGGAGTTGCGGAAGCTCTGTTGTCATCCTTACATGTTGGAAGGAGTTGAGCCATACATTCAAGATGCAAAAGAATCTTACAAAAAGCTGTTGGAATCATCTGGGAAGTTGCAATTGTTAGACAAAATGATGGTGAAGCTTAAAGAACAAGGGCATAGAGTCCTCATATATTCACAGTTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAAGTGGCAGTATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTACGAATAGATCGGTTCAACGCGAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAATCTTGCAACAGCGGACACGGTTATTATATACGATAGTGATTGGAACCCTCATGCTGATCTCCAAGCTATGGCGAGGGCTCATCGACTTGGACAAACTAATAAGGTAATGATTTATAGGCTTGTAACACGGGGAAGCATTGAAGAAAGAATGATGCAGATGACTAAGAAGAAAATGGTGCTAGAACATCTTGTTGTAGGCAGGCTAAAATCTCAAAATATTAACCAGGAGGAGTTGAATGATATTATAAGGTATGGCTCCAAGGAGTTATTTGATGATGAGAATGATGAAGCAGGGAAATCACGCCAGATTCATTATGATGATGCTGCCATAGATAGATTGCTGGACCGTGAACAAGTTCGTGATGAAGAGGCTACAATGGATGATGATGAGGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCCGAAGAGGCAGCAAAAAAGAAAGCTATGGAGAATGAGTCTGCTGTGGCTAGTACAGAAAGAGCAAAATACTGGGAGGAGTTGTTAGGAGACAGATATGAAGTTCATAAAGTTCAAGAGTTGGATGCCTTAGGCAAAGGGAAGCGGAGTCGTCACAAGCAGATGGTCTCTGTTGAGGATGATGATCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGATGACAATGTTGATGCGGAGCTTACTGATGGTGATTCAAACTCAAATGGAACTATTCCTAAAAGACCTTATAAAAAGAGAGCCCGTGATAGCACAGAGCCACCTCCTCTTATGGAAGGTGAAGGAAAATCATTTCGAGTGCTTGGTTTTAATCAGAATCAGAGAGCTGCGTTTGTGCAAATTCTGATGAGGTTTGGGATGGGTGATTATGATTGGAAGGAGTTCACTTCTCGGATGAAACAGAAGACTTATGAAGAAATCAAAGACTACGGAATCCTTTTCCTAAATCATATTATTGAAGATATAACCGATGCCTCTACATTCTCAGATGGCGTTCCAAAAGAAGGGCTTAGAATTCAAGATGTACTTGTGAGGATTGCAATTCTGGGCTTGATAAGGGAAAAAGTGAGGTTAGCATCAGAAAACCCTGGGACTCCACTTTTTTCAGCTGAAATCTTATTTCGCTATCCCAGTTTGAAGGGTGCAAAGTTTTGGAAGGAGGAGCATGATTTAGTGCTGCTGCGTGCTGTGTTGAAGCACGGATATGGAAGGTGGCAAGCTATTCTTGATGACAAGGACCTGAAGATTCATGAGATCATCTGTCAGGAGTTGAACCTTCCTCTTATAAATTTACCGGTACAGGGACAAGCAGGCTCTCAGGCACAAAATAGTGCAAATTTGTCCAACGCAGGAGCAGTTAGCAATCAATCTCAGGAAAATGATGGGGGTGACAAAGCAGCTGATGGTGCACTTGGTTCTGGTGATGCTAGGAGCCAAACACTTTTATATCAAGAGTCCTCCATGTCATATCATTTTAGAGACATGCAGAGGAGACAGGTTGAGTTTATAAAAAAGAGGGTGCTTCTCTTGGAAAAAGGAATCAATGCAGAGTACCAGAAAGAATGCTTAGGTGAAGTAAAAGTAAATGAAGTAACAAGCAATGGACTTAATTGTGAAGGACCCAAGGCTACAAGTATGCCTAGTAATATATCAGGGGAGACAGACACCCAAATGTCTGATCAACTGCCTCAAGTGGAAACAATAGCTTCAGACAAGATTTCTGTTGCTGATTGTGATCCAAATCGTTTGGAATTGATTCGGCTTTACAATGAGATGTGTAAAGTCATGGACGAAAACCCCAATGCAAGAAAACAAGCAGAAGTTGACGTGAAGAACTTGCAGGCAATAGAGCCCATTTGTGAAGACATCAATAGAATTCTAACACCCTTACAGCAAAGTCACCCTTCTGAAGAAAAGCCATTATTGATTCCAGAGAATAAATTAGAGGTTTCGCCACAAAATGAAATTGTGGTTTCTCAAGATGGAAAACCTACATCGGTGGGTGACGAGAGAAGAGATCTTGTAACGGAGGGTCAACTTACAAAAGAAAACAGCACGGGTCTAGTCGAAGAGAAGGAAACACCAAGTCTTTTAGAAACAAGGGGAAGTGATATAGAAATGAATGAAGCTGAGAATGATGCCCAACTGAATGAAAAGAAAGAAAACAGCTCGGGTCTAGTCGAAGAGAAGGAAACACAAAGTCTTTTAGAAACAAGGGGAAGTGATATAGAAATGAATGAAGGTGAGAATGATGCTGAACTGAATGAAAAGAAAGAAAACAGCACAGGTCCCGTCGAAGAGAAGGAAACACCAACACCAAGTCTTTTAGAAACAAGGGGAAGTGATATAGAAATGAATGAAGCTGGGAATGACGCTGGACTGAATGAGAAGAAAGAAAACTCTGACCCACAGGTCATCTTGTTGGATGATTAA 4521 0.4081 MSSLVERLRARSDRKPIYSIDESDDDADILPGKHEPTQEKFERIVRSDTKENCCQACGENGELLNCETCTYAYHPRCLLPPLRAPVPDNWRCPECVSPLNDIDKILDCEMRPTLADDSDSTKLGSKQIFVKQYLVKWKGLSYLHCSWVPEKEFLKAYKTHPRLKTKVNNFHRQMSSVNTSDEDFVAIRPEWTTIDRIIACRGDDEKEYLVKWRELSYDECSWEFESDISEFQAEIERFNRFQSRSRKLVISNKQKGSVRDGAELMRHQKEFHQCEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFQENISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAVIREYEFYFPKSQKKLKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSEQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPYIQDAKESYKKLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKKWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRLKSQNINQEELNDIIRYGSKELFDDENDEAGKSRQIHYDDAAIDRLLDREQVRDEEATMDDDEDGFLKAFKVANFEYIDEVEAAAEEAAKKKAMENESAVASTERAKYWEELLGDRYEVHKVQELDALGKGKRSRHKQMVSVEDDDLAGLEDVSSDGDDNVDAELTDGDSNSNGTIPKRPYKKRARDSTEPPPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGMGDYDWKEFTSRMKQKTYEEIKDYGILFLNHIIEDITDASTFSDGVPKEGLRIQDVLVRIAILGLIREKVRLASENPGTPLFSAEILFRYPSLKGAKFWKEEHDLVLLRAVLKHGYGRWQAILDDKDLKIHEIICQELNLPLINLPVQGQAGSQAQNSANLSNAGAVSNQSQENDGGDKAADGALGSGDARSQTLLYQESSMSYHFRDMQRRQVEFIKKRVLLLEKGINAEYQKECLGEVKVNEVTSNGLNCEGPKATSMPSNISGETDTQMSDQLPQVETIASDKISVADCDPNRLELIRLYNEMCKVMDENPNARKQAEVDVKNLQAIEPICEDINRILTPLQQSHPSEEKPLLIPENKLEVSPQNEIVVSQDGKPTSVGDERRDLVTEGQLTKENSTGLVEEKETPSLLETRGSDIEMNEAENDAQLNEKKENSSGLVEEKETQSLLETRGSDIEMNEGENDAELNEKKENSTGPVEEKETPTPSLLETRGSDIEMNEAGNDAGLNEKKENSDPQVILLDD 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00840 1506 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 240 IPR023780 -
Accr4g00840 1506 Pfam Chromo (CHRromatin Organisation MOdifier) domain 116 156 IPR023780 -
Accr4g00840 1506 CDD CD1_tandem 98 172 - -
Accr4g00840 1506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Accr4g00840 1506 MobiDBLite consensus disorder prediction 1382 1461 - -
Accr4g00840 1506 SMART helicmild6 638 722 IPR001650 -
Accr4g00840 1506 MobiDBLite consensus disorder prediction 1136 1158 - -
Accr4g00840 1506 ProSiteProfiles Chromo and chromo shadow domain profile. 192 253 IPR000953 -
Accr4g00840 1506 Gene3D - 1036 1207 - -
Accr4g00840 1506 Pfam PHD-finger 54 96 IPR019787 -
Accr4g00840 1506 SMART ultradead3 282 495 IPR014001 -
Accr4g00840 1506 CDD SF2_C_SNF 607 733 - -
Accr4g00840 1506 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Accr4g00840 1506 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Accr4g00840 1506 SMART chromo_7 99 162 IPR000953 -
Accr4g00840 1506 SMART chromo_7 190 243 IPR000953 -
Accr4g00840 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 519 IPR027417 -
Accr4g00840 1506 Gene3D - 197 240 - -
Accr4g00840 1506 MobiDBLite consensus disorder prediction 1136 1169 - -
Accr4g00840 1506 Pfam CHD subfamily II, DUF1087 843 905 IPR009463 -
Accr4g00840 1506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 771 IPR001650 -
Accr4g00840 1506 SMART PHD_3 53 96 IPR001965 -
Accr4g00840 1506 Coils Coil 837 857 - -
Accr4g00840 1506 Gene3D - 278 528 IPR038718 -
Accr4g00840 1506 MobiDBLite consensus disorder prediction 904 924 - -
Accr4g00840 1506 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Accr4g00840 1506 SMART DUF1087_2 842 908 IPR009463 -
Accr4g00840 1506 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Accr4g00840 1506 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Accr4g00840 1506 Pfam SNF2-related domain 305 586 IPR000330 GO:0005524|GO:0140658
Accr4g00840 1506 MobiDBLite consensus disorder prediction 889 903 - -
Accr4g00840 1506 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Accr4g00840 1506 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 47 1470 - -
Accr4g00840 1506 SMART DUF1086_2 914 1069 IPR009462 GO:0003677|GO:0006338
Accr4g00840 1506 CDD CD2_tandem 190 240 - -
Accr4g00840 1506 MobiDBLite consensus disorder prediction 1487 1506 - -
Accr4g00840 1506 Pfam CHD subfamily II, SANT-like domain 937 1065 IPR009462 GO:0003677|GO:0006338
Accr4g00840 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 784 IPR027417 -
Accr4g00840 1506 MobiDBLite consensus disorder prediction 889 956 - -
Accr4g00840 1506 SUPERFAMILY Chromo domain-like 175 241 IPR016197 -
Accr4g00840 1506 Gene3D - 98 196 - -
Accr4g00840 1506 Gene3D - 529 753 IPR027417 -
Accr4g00840 1506 MobiDBLite consensus disorder prediction 1340 1506 - -
Accr4g00840 1506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00840 Accr-Chr4 7864574 7878777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00840 308 749 RAD5 or RAD16-like Gene Family AT1G02670 22.031 7.33e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr4g00840 SNF2_N 1.9e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00840 K11643 - gmx:100804203 2211.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00805 3 8958042 8973852 Accr4g00840 4 7864574 7878777 CCT