Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00838 ATGACGGCGGAGACCGGAATGGATGATCCCGGAGACCAGTTTCCGGTAGGAATGCGTGTTCTTGCCGTTGACGATGACCCAACTTGCCTTTTCTTGTTGGGGGCTCTTCTTCGAAGATGCCAATATAACGTGACGACAACTAATCAGGCAATAGCAGCATTGGAGTTGTTGAGAGAAAACAGAAACAAGTTTGACCTAGTTATCAGTGATGTTCATATGCCAGACATGGATGGATTTAAGCTACTCGAGCATGTAGGACTTGAGATGGACTTGCCAGTCATAATGTTGTCTGCACATGGTGACCCAAAACTAGTGATGAGGGGAATTACCCATGGAGCATGTGATTATCTGCTGAAACCTGTTCGAATGGAAGAGCTAAAGAACATTTGGCAGCATGTGATCAGGAGGAGGAAGTTTGATTCTAAGGAGCAGAACAAACCCAACAACCAAGACAAGCAGCCTCTTGCTGGTAGCGGCTGCAGTCCAGGGTCAGCAGGAACAAGCAACACAGATCAAAAGATGACCAAGAAAAGGAAGGATCAGAATGATGAAGATGATGAGCATGAGGAGGACCCGTCGACCCAGAAGAAGCCTCGGGTTGTCTGGACAGTGGAGCTGCACCGCAAGTTTGTTGCCGCTGTTAATCAGTTAGGCATTGACAAAGCTGTACCTAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACTAGGGAGAATGTGGCTAGCCATCTCCAGAAATATAGGCTTTATTTGAAAAGAATCAGTTGTGTGGCGAACCAACAGGCTAGTCTGGTGGCGGCCTTAGGTACTGCAGATCAATCCTATTGGAGAATGGGTTCTATGAGTGGTCTCAGCAATTTGCATACATTGACTGCTCCTAGACAGTTTCAGAACACTGTTTTTAGACCCCTCTCATCTAGTGGGGTGATTGGTAGATTGAACACTCCTTCTGGCCTGGTTGTGCATGGATCGCCTTCGTCAAGAAATATTCAGTTTGGTTGTGCACAGAATTTAAACAATTCTATGAATGATCCACTCAAGTTCCAGTCAACCATTGTTCATGGTAACCAAAATGGCAATTTAGTTCTGGGAATAACAGGTTATTCTGAGCGTGATCAATTACAACACCATAAGCATAAAAGCATTAGTTCTGTTCAAGACATGGCGAATGCGAGCTGCTCACACACTTCACTTCCAAGTGTAAGAAACAACTCCTTTATGGTAGCAGCGCGTCCTCAAAACACGCAAGGGGGAGGAGCAAATGAGAATTTATCTTCAATAGATTCTCAACCTTCAGAAATTTCTCGCTCTTTGCTGGATCATGGTAGTTGTGGTGCTAATTGGTCAAATGGCGTGCAGCCAACTCAAATCCTGCCAAGTTCTTATCCACCAACTGGGTTTCCTAGACAACTGGGTTTCCTGCCAAGTTCAAATCCGAGTGGTTCTTCATCCATCACTTTAATGTATAGTCAATCCCATGATGCAACAGCAAATGCAAATTCCCAAGGAGGCATTAATTCCTCAGGGCACATGAGCAGTAATGTACAATTTCGAGGGTGGGAAGACCGAAATCAGGATGCTGCTTACCGTTCAAATGTTTTGTGTAGCTCTCTAAACTCTCTGATTCATGAAAATAGTGGTGTTAGTGGATCAGCTAGTCCTTCTCCAACAGACCCAGCCTTCTACAGGAACTTGAACTTCAATTGTGGTAATCCCATACAAACTAAGCATGATGGGTTTGCAAAACTGGCTGAAGAGATCCCGTTGAGACAAGATCAAGGGTATATCATACACCAGCAGATGGCACAACAGAGTCGCATCTCTAACAATCTTGGTTCACTGGATGACTTAGTCGGTTCACTGATGAAACAGGATAAAGACAAGGTGAAATTATTGGATGGAGACTTAATTTGTAATAATTACACTGTAGGGACATCGATGTGA 1947 0.4402 MTAETGMDDPGDQFPVGMRVLAVDDDPTCLFLLGALLRRCQYNVTTTNQAIAALELLRENRNKFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAHGDPKLVMRGITHGACDYLLKPVRMEELKNIWQHVIRRRKFDSKEQNKPNNQDKQPLAGSGCSPGSAGTSNTDQKMTKKRKDQNDEDDEHEEDPSTQKKPRVVWTVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQASLVAALGTADQSYWRMGSMSGLSNLHTLTAPRQFQNTVFRPLSSSGVIGRLNTPSGLVVHGSPSSRNIQFGCAQNLNNSMNDPLKFQSTIVHGNQNGNLVLGITGYSERDQLQHHKHKSISSVQDMANASCSHTSLPSVRNNSFMVAARPQNTQGGGANENLSSIDSQPSEISRSLLDHGSCGANWSNGVQPTQILPSSYPPTGFPRQLGFLPSSNPSGSSSITLMYSQSHDATANANSQGGINSSGHMSSNVQFRGWEDRNQDAAYRSNVLCSSLNSLIHENSGVSGSASPSPTDPAFYRNLNFNCGNPIQTKHDGFAKLAEEIPLRQDQGYIIHQQMAQQSRISNNLGSLDDLVGSLMKQDKDKVKLLDGDLICNNYTVGTSM 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00838 648 FunFam Two-component response regulator 193 256 - -
Accr4g00838 648 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Accr4g00838 648 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Accr4g00838 648 CDD REC_typeB_ARR-like 20 134 - -
Accr4g00838 648 Gene3D - 193 256 - -
Accr4g00838 648 SUPERFAMILY CheY-like 17 142 IPR011006 -
Accr4g00838 648 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Accr4g00838 648 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Accr4g00838 648 PIRSF RR_ARR_type-B 1 646 IPR017053 GO:0003677|GO:0003700|GO:0009736
Accr4g00838 648 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Accr4g00838 648 MobiDBLite consensus disorder prediction 148 171 - -
Accr4g00838 648 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 376 IPR045279 GO:0009736
Accr4g00838 648 MobiDBLite consensus disorder prediction 140 198 - -
Accr4g00838 648 SMART REC_2 18 130 IPR001789 GO:0000160
Accr4g00838 648 MobiDBLite consensus disorder prediction 172 198 - -
Accr4g00838 648 Gene3D - 17 154 - -
Accr4g00838 648 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00838 Accr-Chr4 7849409 7853112 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00838 1 637 Response Regulator Gene Family AT2G25180 44.242 1.53e-131 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Accr4g00838 Response_reg 2.9e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00838 - K14491 gmx:100803879 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00803 3 8953542 8956557 Accr4g00838 4 7849409 7853112 CCT
Accr4g00838 4 7849409 7853112 Accr4g00838 4 7849409 7853112 ECH