Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00824 ATGGCCTCCCACAATCAACCACACCTCTCCCCCCACCATTTCTCCGACTCCGATCACCCCCTCCTCCATTCCAACTACTTCCTCAACCTCCACTCTACCGCCCCCTCCGACTCTGCCGGAGCTGCTCCCCACCGCCCGATCCTCCGCCCTGACCACACCCACGTCATTGACGACGTCGCTGCTGCCTTGTCCCACGACTCCGCCGATTTGAATATGGCCTCTGGCGACAACCCCAATGCGAAGAGCGAGGTGGGTGTCGAGGATGCGAGGTCCAAGGCTGAGATTCTAGCGCATCCGCTGTACGAACAGCTGCTGTCGGCACACGTGGCGTGTTTACGGATCGCCACGCCGGTTGACCAGTTGCCCAGGATTGACGCTCAACTAGCTCAGTCCCAGAATGTGGTGGCCAAGTACTCTGCTTTGGGACATGGAGCTCATAACATGGTTGCCGATGAGAAGGGACTCGATCTATTCATGTCCCATTATGTTCTGTTGCTCTGCTCCTTCAAAGAACAACTTCAACAACATGTCCGGGTTCATGCTATGGAAGCAGTCATGTCATGTTGGGAGATAGAACAATCCTTACAAAGTTTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCTACCATGTCTGATGACGAAGAAGACCAAATAAATAGTGATGGCAATATTTTTGATGGTTCAGACAGCATGGGATTTGGCCCTCTTGTTCCAACTGAGAATGAGAGATCGCTCATGGAGCGAGTTAGGCAAGAGTTGAGACATGAACTGAAACAGGGCTATAAGAGTAAAATTGTGGATGTAAGAGAAGAAATTTTGCGAAAGAGACGAGCTGGGAAACTTCCTGGGGATACCACCTCTGTCCTTAAAGCTTGGTGGCAAGCCCATTCCAAGTGGCCTTACCCTACTGAGGAAGACAAGGCAAAGTTGGTGCAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTCATCAATCAAAGGAAGAGGAATTGGCACGGCAATGCTTCAACTTCTACAGTCTCAAAGAGCAAGCGTAAGAGATGA 1053 0.5052 MASHNQPHLSPHHFSDSDHPLLHSNYFLNLHSTAPSDSAGAAPHRPILRPDHTHVIDDVAAALSHDSADLNMASGDNPNAKSEVGVEDARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGAHNMVADEKGLDLFMSHYVLLLCSFKEQLQQHVRVHAMEAVMSCWEIEQSLQSLTGVSPGEGTGATMSDDEEDQINSDGNIFDGSDSMGFGPLVPTENERSLMERVRQELRHELKQGYKSKIVDVREEILRKRRAGKLPGDTTSVLKAWWQAHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHGNASTSTVSKSKRKR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00824 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 92 334 - -
Accr4g00824 350 SMART KNOX2_2 144 200 IPR005541 GO:0003677|GO:0005634
Accr4g00824 350 Pfam KNOX2 domain 149 199 IPR005541 GO:0003677|GO:0005634
Accr4g00824 350 Pfam KNOX1 domain 92 132 IPR005540 GO:0003677|GO:0005634
Accr4g00824 350 Pfam ELK domain 253 274 IPR005539 GO:0003677
Accr4g00824 350 SMART HOX_1 275 340 IPR001356 GO:0003677
Accr4g00824 350 FunFam homeobox protein knotted-1-like 3 isoform X1 274 335 - -
Accr4g00824 350 SMART ELK_2 253 274 IPR005539 GO:0003677
Accr4g00824 350 SUPERFAMILY Homeodomain-like 275 338 IPR009057 -
Accr4g00824 350 CDD homeodomain 276 335 IPR001356 GO:0003677
Accr4g00824 350 Gene3D - 272 348 - -
Accr4g00824 350 SMART KNOX1_2 89 133 IPR005540 GO:0003677|GO:0005634
Accr4g00824 350 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Accr4g00824 350 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Accr4g00824 350 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00824 Accr-Chr4 7755714 7758497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00824 56 350 Homeobox Transcription Factor Family AT5G25220 77.632 4.25e-172 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr4g00824 KNOX2 5.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00824 - - pcin:129303573 500.36