Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00788 ATGTCGCATTTGCTGCACGGGATACTTCATGTAATCATACATGAGATCGACAAACTTCATTCTGGACTCAACCTCAGTGTCAACAACCAGGTGCCTTCATCAAAATCAAAACGTCATTTTCTTGCTGCAAGAAACATTGGGAAGAAAGTTCTTACCAGAGTCAAGAGTGTTTTGCGATTCAAGCCGCACCAGCAGATAGCTGGGACTAGAATGTATGCAACTGTTGATTTAGATAAAGCAAGAGTTGGGCGAACAAGAACGATACGCCAAGCTTCTAAACCAAAATGGAACGAGACATTTCATATATATTGTGCTCATTCAATTTCTGAGATCATATTCACTGTCAAATATGAAAATCCAATTGGAGCAACTCTAATTGGAAGAGCTCATGTAGCTGCTGAGCTAGTCCTCAAGGGCCACGTAGTGGATACTTGGGTTGCAATCTTAGATGAGGATCGTCGTCCCATACAAGGTGGTTCTAGAATACTTGTCACAATGCAATTCTCTGACGTTACTAAGGATGTAACTTGGTCTCAAGGAATCAAAAGCCCTCGATACGCTGGTGTTCCTCGTACCTTCTTTACTCAAAAAGTTGGCTGCAAAGTTACTTTGTACCAAGATGCTCATGTCCCAAATGCTTATCTTCCTAGGATTCGTTTGTCAGAAGGAAGATATTATGAGCCTAGTAGATGTTGGGAGGACATTTTTAATGCAATCACAAATGCTAGACACTTGATTTACATAACTGGCTGGTCTGTGTATACTGAAATAACCTTGATAAGGGACCCAAGGAGGCCAATTTCTGGTGGAAACATCACTCTTGGGGAACTTTTGAAGAAGAAAGCTGATGAAGGTGTTAATGTTCTTATGCTTGTGTGGGATGATAGAACTTCTGTTGAAGAGCTAAAGAAAGATGGGCTAATGGCGACCCATGATCAAGAAACAGAAGACTATTTCAGGAACACAAAAGTGAAGTGTGTGTTATGTCCACGTAACGCAGATGATGGACGTAGCATAATTCAAGGCATTGAGATTTCAACAATGTTCACTCATCATCAAAAGACAGTGATCGTTGACAGTGAAGTTAACGGCGGCAGGAGCGGAGGAGGATCTCAGAGGCGAAGGATAGTGAGTTTCATCGGCGGTATTGATCTGTGTGATGGGAGATATGACACACAAGAACATCCTTTGTTTTCAACTCTAAACACAACTCATTATAATGATTTTCACCAGCCAAATTTCCCAGGAGCTTCAATTAAAAAAGGAGGCCCAAGAGAGCCATGGCATGATATTCATTGCAAATTAGAAGGGCCAGTGGCTTGGGATGTCTTGTTCAACTTTCAACAAAGGTGGGAGAAACAAGTTGGGAAGCGATTCTTACTTCCTTCTAGATTGCTTGATCAGATTCTAGTGCCTCAATTTAATACAGAGACAGGGAACGACAGAGACGCGTGGACTGTTCAATTGTTCAGATCCATTGATGGTGGTGCAGCTTCTGGTTTTCCTCAAGACCCATCTAAAGCAAATGAATTAGGCCTTGTTAGTGGGAAAGATAACGTTATTGATAGAAGTGTTCAGGATGCTTATATAAATGCTATTAGGCGAGCCAAGAACTTCATCTACATTGAAAACCAGTATTTTCTAGGGAGCTCATATGGTTGGAAGGGATCTGACATTAAAGTTGAAGATATTGGGGCTTTGCATCTTATACCAAAGGAGCTATCTTTGAAGATTGTGAGCAAGATTGAAACGGGAGAAAGGTTTGCTGTGTACATTGTGATCCCAATGTGGCCAGAAGGTGTCCCTGACAGTGGTTCTGTTCAAGCAATATTGGATTGGCAAAGAAGGACAATGGAGATGATGTACACTGATATTGCTGCTGCTATTCAGAGAAAAGGAATCAGAGCCCACCCTAGAGATTACTTGACATTTTTCTGCCTTGGAAATCGAGAGAGTAAGAAACCAGGAGAATACGTTCCTCCAGAGAGACCAGATCCTGACAGCGATTACAGCAAAGCACAAAATGCTAGGCGCTTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCCTTGGTTCTGCCAACATAAACCAGAGATCAATGGATGGTGCAAGGGACACTGAGATTGCAATGGGTGCGTTCCAACCATATTATCTTGCATCCTATGGCCCACCCAGAGGTCAAATATATGGGTTTAGACGAGCTTTATGGTACGAACATCTTGGGGAACCTGAAGGTGATAAAGCCTTTGACCATCCGGAAAGTGAACATTGTGTGAAACTTGTGAATTATCTCTCAGACTTGAATTGGGAAAAATATTCAAATCCAACATTTGACCCACGAAGTTCATTCAACCACCTAATGCGTTATCCTATAGATATAACCAAAGATGGGAATGTAACAAAACTACAAGAGTTTGAATTCTTTCCTGACACTAAGGCTTCTGTTCTTGGCTCCAGATCAAGCCTTCCTCCAATCCTCACCACCTAG 2508 0.4167 MSHLLHGILHVIIHEIDKLHSGLNLSVNNQVPSSKSKRHFLAARNIGKKVLTRVKSVLRFKPHQQIAGTRMYATVDLDKARVGRTRTIRQASKPKWNETFHIYCAHSISEIIFTVKYENPIGATLIGRAHVAAELVLKGHVVDTWVAILDEDRRPIQGGSRILVTMQFSDVTKDVTWSQGIKSPRYAGVPRTFFTQKVGCKVTLYQDAHVPNAYLPRIRLSEGRYYEPSRCWEDIFNAITNARHLIYITGWSVYTEITLIRDPRRPISGGNITLGELLKKKADEGVNVLMLVWDDRTSVEELKKDGLMATHDQETEDYFRNTKVKCVLCPRNADDGRSIIQGIEISTMFTHHQKTVIVDSEVNGGRSGGGSQRRRIVSFIGGIDLCDGRYDTQEHPLFSTLNTTHYNDFHQPNFPGASIKKGGPREPWHDIHCKLEGPVAWDVLFNFQQRWEKQVGKRFLLPSRLLDQILVPQFNTETGNDRDAWTVQLFRSIDGGAASGFPQDPSKANELGLVSGKDNVIDRSVQDAYINAIRRAKNFIYIENQYFLGSSYGWKGSDIKVEDIGALHLIPKELSLKIVSKIETGERFAVYIVIPMWPEGVPDSGSVQAILDWQRRTMEMMYTDIAAAIQRKGIRAHPRDYLTFFCLGNRESKKPGEYVPPERPDPDSDYSKAQNARRFMIYVHAKMMIVDDEYIILGSANINQRSMDGARDTEIAMGAFQPYYLASYGPPRGQIYGFRRALWYEHLGEPEGDKAFDHPESEHCVKLVNYLSDLNWEKYSNPTFDPRSSFNHLMRYPIDITKDGNVTKLQEFEFFPDTKASVLGSRSSLPPILTT 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00788 835 FunFam Phospholipase D delta 222 469 - -
Accr4g00788 835 PIRSF PLD_plant 1 835 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Accr4g00788 835 Pfam C2 domain 69 147 IPR000008 -
Accr4g00788 835 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Accr4g00788 835 SMART C2_3c 8 145 IPR000008 -
Accr4g00788 835 FunFam Phospholipase D 492 725 - -
Accr4g00788 835 Gene3D C2 domain 4 168 IPR035892 -
Accr4g00788 835 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 66 170 IPR035892 -
Accr4g00788 835 Gene3D Endonuclease Chain A 497 721 - -
Accr4g00788 835 SUPERFAMILY Phospholipase D/nuclease 525 751 - -
Accr4g00788 835 SMART pld_4 679 706 IPR001736 GO:0003824
Accr4g00788 835 SMART pld_4 347 389 IPR001736 GO:0003824
Accr4g00788 835 Gene3D Endonuclease Chain A 220 468 - -
Accr4g00788 835 Pfam Phospholipase D C terminal 753 825 IPR024632 -
Accr4g00788 835 SUPERFAMILY Phospholipase D/nuclease 172 463 - -
Accr4g00788 835 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 347 389 IPR001736 GO:0003824
Accr4g00788 835 CDD C2_plant_PLD 4 168 - -
Accr4g00788 835 Pfam Phospholipase D Active site motif 680 706 IPR001736 GO:0003824
Accr4g00788 835 Pfam Phospholipase D Active site motif 347 389 IPR001736 GO:0003824
Accr4g00788 835 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 679 706 IPR001736 GO:0003824
Accr4g00788 835 PANTHER PHOSPHOLIPASE D 4 825 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00788 Accr-Chr4 7504280 7508243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00788 3 835 Phospholipase D Gene Family (Wang group) AT3G15730 63.114 0.0 1094
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00788 K01115 - gmx:100791688 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00788 4 7504280 7508243 Accr7g00827 7 13449233 13452305 ECH
Accr4g00788 4 7504280 7508243 Accr4g00788 4 7504280 7508243 ECH