Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00754 ATGTTGGATGTTTATATCCATGATTACCTGGTTAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTGTCTTCGGATCCCGTTGCTATTGATGCCCCTGGAGGATTTCTGTTCGAGTGGTGGTCGGTATTCTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCAGAAGTTGCAGCATCTTATATTGAGACACAGTTAATCAAGGCAAGGGAACAACAGCAGCAGCAACAGCCTCAGCAACAGCCGTCGCCGTCACAACATCAGCAATCACAACATCAGCAACAGCAGCAGCAGCACATGCAGATGCAGCAATTCCTGTTACATAGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCCGCCCCCACCGCCGTCACAACCTCCGCAGCAGCAGCAGCCACCTCCGCAACAGCAGCAGAGAAGGGATGGGACTCATCTCTTAAATGGCAGTACAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCTATGGCCACCAAGATGTATGAAGAGAGGTTAAAACCTCCCCTTCAGAGGGATTCTTTGGATGATGCAGCCATGAAGCAAAGATTTGGTGACAACATGGGCCAACTCTTGGACCCTAATCATGCCCCAATAATGAAGTCAGCTGCAGCTTCTGCCCAGTCTTCAGGACAAGTTTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAATTGCCAGGGTCTACTCCAGATGTAAAGAGTGAGATTAATCCTGTTTTGAACTCAAGAGCTGCAGGTCCTGAAGGATCATTAATGGGAATTCCTGGATCAAATCAAGGCAGCAGCAATTTGACTCTGAAAGGATGGCCACTCACAGATTTTGAACAACTGCGCTCTGGTATTCTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAACCCCTTCATCAACTACAAATGTTGACACCTCACCATCAACAGCAGCTTATGCTTGCGCAGCAAACTTTGTCATCCCCATCTGCCAGTGAGGAGAATAGAAAACTGAGAATGCTACTGAGTCAAAGGAATATGGGCCTAAATAAGGATGGCCTTTCAAATTCTGTTGACGTGGTTCCAAATGTTGGATCACCTCTTCAAGCTGGTGGCCCTCTTTTGCCTCGTGGTGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGCAAATACATCATCAACAACAGCAGCAGAGCAACAATCCACAGCAGCAGCAACTTCAACAGCATGTTCTATCAAATCAGCAGCCTCAGACTTCAAACCATAATATGCATCAGCTAGATAAAGTGGGTGGCGGCGGCAGCGTCACCATGGATGGAAGCATGTCAAACTCCTTCAGAGGAAATGATCAGGTTTCCAAAAACCAGACGGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCAAATAGTTCTGGAACAGCAAATACAGCAGGCCCATCTCCAAGTTCTGCACCCTCAACTCCCTCAACTCATACACCTGGAGATGTGATATCCATGCCTGCTTTGCCTCATAGCGGCAGTTCTTCAAAGCCTTTAATGATGTTTAGCAATGATGGTACTGGAACTCTCACATCGCCTTCAAACCAGTTGGTTGATATGGATCGTTTTGTAGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTATCGCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCGCCTTCACATTTTCTGAAGTAAGTTCTGTACAAGCAAGCACAAACAAAGTTGTTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCAAGTGGTGGTCATGACAAGAAGGCTGTGTTATGGCACACAGATTCATTAAAGCAAAAGGCCACTCTAGAAGAACATTCATCTATGATCACTGATGTCCGTTTCAGTTCAAGCATGCCTCGTCTTGCAACGTCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTCGACAATCCTGGATATACAATTCGCACCTTTACAGGACATTCTGCATCTGTTATGTCATTAGATTTTCACCCAAACAAGGATGATCTGATCTGCTCCTGTGATGGTGATGGTGAGATACGATATTGGAGTATAATCAATGGTAGCTGTACTAGAGTCTCGAAGGGCGGCACTGCCCAGATGAGATTTCAACCTCGTGTGGGGAGGTACCTTGCTGCAGCCTCAGAGAATGTTGTCTCTGTATTTGATGTGGAGACACATACATGCAGATATTCACTACAGGGACATACAAAGGCAATACATTCTGTTTGCTGGGACCCTACTGGGGAATTATTGGCATCTGTGAGTGAGGACTCAGTCAGGGTTTGGACTCTTGGGGCAGGAGCTGAAGGAGAATGTGTTCACGAGCTAAGCTGTAACGGCAATAAGTTCCACTCCTGTGTTTTCCACCCAACTTATTCTGACTTGCTGGTCATTGGCTGTTACCAGTCTTTAGAGCTTTGGAATATCGCGGAGAACAAGACAATGACTGTGGCTGCCCATGAAGGTCTCATTGCTGCCTTGGCAGTGTCTCCGGTGACTGGTTCGGTTGCTTCAGCTAGCCATGACAAGTACGTCAAGCTCTGGAAATAA 2646 0.4626 MLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQQQPSPSQHQQSQHQQQQQQHMQMQQFLLHRQQQQQQQQQQQQPPPPPSQPPQQQQPPPQQQQRRDGTHLLNGSTNGLVGNPSTANAMATKMYEERLKPPLQRDSLDDAAMKQRFGDNMGQLLDPNHAPIMKSAAASAQSSGQVLHGVGGGMSQQVQARSQQLPGSTPDVKSEINPVLNSRAAGPEGSLMGIPGSNQGSSNLTLKGWPLTDFEQLRSGILHQQKPFIQAPQPLHQLQMLTPHHQQQLMLAQQTLSSPSASEENRKLRMLLSQRNMGLNKDGLSNSVDVVPNVGSPLQAGGPLLPRGDTDMLMKLKLAQQIHHQQQQQSNNPQQQQLQQHVLSNQQPQTSNHNMHQLDKVGGGGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSNDGTGTLTSPSNQLVDMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGAFTFSEVSSVQASTNKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSMITDVRFSSSMPRLATSSFDKTVRVWDVDNPGYTIRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIINGSCTRVSKGGTAQMRFQPRVGRYLAAASENVVSVFDVETHTCRYSLQGHTKAIHSVCWDPTGELLASVSEDSVRVWTLGAGAEGECVHELSCNGNKFHSCVFHPTYSDLLVIGCYQSLELWNIAENKTMTVAAHEGLIAALAVSPVTGSVASASHDKYVKLWK 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00754 881 MobiDBLite consensus disorder prediction 76 168 - -
Accr4g00754 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 597 638 IPR001680 GO:0005515
Accr4g00754 881 MobiDBLite consensus disorder prediction 403 544 - -
Accr4g00754 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 764 796 IPR001680 GO:0005515
Accr4g00754 881 CDD WD40 593 881 - -
Accr4g00754 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 849 881 IPR001680 GO:0005515
Accr4g00754 881 Pfam WD domain, G-beta repeat 636 671 IPR001680 GO:0005515
Accr4g00754 881 Pfam WD domain, G-beta repeat 760 794 IPR001680 GO:0005515
Accr4g00754 881 Pfam WD domain, G-beta repeat 678 715 IPR001680 GO:0005515
Accr4g00754 881 Pfam WD domain, G-beta repeat 600 628 IPR001680 GO:0005515
Accr4g00754 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 849 881 - -
Accr4g00754 881 SMART WD40_4 842 881 IPR001680 GO:0005515
Accr4g00754 881 SMART WD40_4 590 629 IPR001680 GO:0005515
Accr4g00754 881 SMART WD40_4 632 671 IPR001680 GO:0005515
Accr4g00754 881 SMART WD40_4 757 795 IPR001680 GO:0005515
Accr4g00754 881 SMART WD40_4 675 715 IPR001680 GO:0005515
Accr4g00754 881 SMART WD40_4 718 754 IPR001680 GO:0005515
Accr4g00754 881 SMART WD40_4 801 840 IPR001680 GO:0005515
Accr4g00754 881 Pfam LisH 1 26 IPR006594 GO:0005515
Accr4g00754 881 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 881 - -
Accr4g00754 881 MobiDBLite consensus disorder prediction 144 168 - -
Accr4g00754 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 682 724 IPR001680 GO:0005515
Accr4g00754 881 Gene3D - 573 729 IPR015943 GO:0005515
Accr4g00754 881 Gene3D - 730 881 IPR015943 GO:0005515
Accr4g00754 881 ProSiteProfiles LIS1 homology (LisH) motif profile. 1 30 IPR006594 GO:0005515
Accr4g00754 881 MobiDBLite consensus disorder prediction 126 143 - -
Accr4g00754 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 682 716 - -
Accr4g00754 881 ProSitePatterns Trp-Asp (WD) repeats signature. 658 672 IPR019775 -
Accr4g00754 881 MobiDBLite consensus disorder prediction 451 511 - -
Accr4g00754 881 MobiDBLite consensus disorder prediction 403 440 - -
Accr4g00754 881 MobiDBLite consensus disorder prediction 76 125 - -
Accr4g00754 881 ProSiteProfiles Trp-Asp (WD) repeats profile. 639 674 IPR001680 GO:0005515
Accr4g00754 881 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 639 674 - -
Accr4g00754 881 SUPERFAMILY WD40 repeat-like 591 881 IPR036322 GO:0005515
Accr4g00754 881 MobiDBLite consensus disorder prediction 519 544 - -
Accr4g00754 881 FunFam Transcriptional corepressor LEUNIG 725 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00754 Accr-Chr4 7232304 7252118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00754 676 880 Miscellaneous Gene Families AT5G08390 24.286 9.41e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr4g00754 WD40 5.4e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00754 - - gmx:100805628 1219.14