Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00753 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTATATCCATGATTACCTGGTTAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTGTCTTCGGATCCCGTTGCTATTGATGCCCCTGGAGGATTTCTGTTCGAGTGGTGGTCGGTATTCTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCAGAAGTTGCAGCATCTTATATTGAGACACAGTTAATCAAGGCAAGGGAACAACAGCAGCAGCAACAGCCTCAGCAACAGCCGTCGCCGTCACAACATCAGCAATCACAACATCAGCAACAGCAGCAGCAGCACATGCAGATGCAGCAATTCCTGTTACATAGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCCGCCCCCACCGCCGTCACAACCTCCGCAGCAGCAGCAGCCACCTCCGCAACAGCAGCAGAGAAGGGATGGGACTCATCTCTTAAATGGCAGTACAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCTATGGCCACCAAGATGTATGAAGAGAGGTTAAAACCTCCCCTTCAGAGGGATTCTTTGGATGATGCAGCCATGAAGCAAAGATTTGGTGACAACATGGGCCAACTCTTGGACCCTAATCATGCCCCAATAATGAAGTCAGCTGCAGCTTCTGCCCAGTCTTCAGGACAAGTTTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAATTGCCAGGGTCTACTCCAGATGTAAAGAGTGAGATTAATCCTGTTTTGAACTCAAGAGCTGCAGGTCCTGAAGGATCATTAATGGGAATTCCTGGATCAAATCAAGGCAGCAGCAATTTGACTCTGAAAGGATGGCCACTCACAGATTTTGAACAACTGCGCTCTGGTATTCTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAACCCCTTCATCAACTACAAATGTTGACACCTCACCATCAACAGCAGCTTATGCTTGCGCAGCAAACTTTGTCATCCCCATCTGCCAGTGAGGAGAATAGAAAACTGAGAATGCTACTGAGTCAAAGGAATATGGGCCTAAATAAGGATGGCCTTTCAAATTCTGTTGACGTGGTTCCAAATGTTGGATCACCTCTTCAAGCTGGTGGCCCTCTTTTGCCTCGTGGTGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGCAAATACATCATCAACAACAGCAGCAGAGCAACAATCCACAGCAGCAGCAACTTCAACAGCATGTTCTATCAAATCAGCAGCCTCAGACTTCAAACCATAATATGCATCAGCTAGATAAAGTGGGTGGCGGCGGCAGCGTCACCATGGATGGAAGCATGTCAAACTCCTTCAGAGGAAATGATCAGGTTTCCAAAAACCAGACGGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCAAATAGTTCTGGAACAGCAAATACAGCAGGCCCATCTCCAAGTTCTGCACCCTCAACTCCCTCAACTCATACACCTGGAGATGTGATATCCATGCCTGCTTTGCCTCATAGCGGCAGTTCTTCAAAGCCTTTAATGATGTTTAGCAATGATGGTACTGGAACTCTCACATCGCCTTCAAACCAGTTGGTTGATATGGATCGTTTTGTAGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTATCGCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCGCCTTCACATTTTCTGAAGTAAGTTCTGTACAAGCAAGCACAAACAAAGTTGTTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCAAGTGGTGGTCATGACAAGAAGGCTGTGTTATGGCACACAGATTCATTAAAGCAAAAGGCCACTCTAGAAGAACATTCATCTATGATCACTGATGTCCGTTTCAGTTCAAGCATGCCTCGTCTTGCAACGTCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTCGACAATCCTGGATATACAATTCGCACCTTTACAGGACATTCTGCATCTGTTATGTCATTAGATTTTCACCCAAACAAGGATGATCTGATCTGCTCCTGTGATGGTGATGGTGAGATACGATATTGGAGTATAATCAATGGTAGCTGTACTAGAGTCTCGAAGGGCGGCACTGCCCAGATGAGATTTCAACCTCGTGTGGGGAGGTACCTTGCTGCAGCCTCAGAGAATGTTGTCTCTGTATTTGATGTGGAGACACATACATGCAGATATTCACTACAGGGACATACAAAGGCAATACATTCTGTTTGCTGGGACCCTACTGGGGAATTATTGGCATCTGTGAGTGAGGACTCAGTCAGGGTTTGGACTCTTGGGGCAGGAGCTGAAGGAGAATGTGTTCACGAGCTAAGCTGTAACGGCAATAAGTTCCACTCCTGTGTTTTCCACCCAACTTATTCTGACTTGCTGGTCATTGGCTGTTACCAGTCTTTAGAGCTTTGGAATATCGCGGAGAACAAGACAATGACTGTGGCTGCCCATGAAGGTCTCATTGCTGCCTTGGCAGTGTCTCCGGTGACTGGTTCGGTTGCTTCAGCTAGCCATGACAAGTACGTCAAGCTCTGGAAATAA 2676 0.4623 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQQQPSPSQHQQSQHQQQQQQHMQMQQFLLHRQQQQQQQQQQQQPPPPPSQPPQQQQPPPQQQQRRDGTHLLNGSTNGLVGNPSTANAMATKMYEERLKPPLQRDSLDDAAMKQRFGDNMGQLLDPNHAPIMKSAAASAQSSGQVLHGVGGGMSQQVQARSQQLPGSTPDVKSEINPVLNSRAAGPEGSLMGIPGSNQGSSNLTLKGWPLTDFEQLRSGILHQQKPFIQAPQPLHQLQMLTPHHQQQLMLAQQTLSSPSASEENRKLRMLLSQRNMGLNKDGLSNSVDVVPNVGSPLQAGGPLLPRGDTDMLMKLKLAQQIHHQQQQQSNNPQQQQLQQHVLSNQQPQTSNHNMHQLDKVGGGGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSNDGTGTLTSPSNQLVDMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGAFTFSEVSSVQASTNKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSMITDVRFSSSMPRLATSSFDKTVRVWDVDNPGYTIRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIINGSCTRVSKGGTAQMRFQPRVGRYLAAASENVVSVFDVETHTCRYSLQGHTKAIHSVCWDPTGELLASVSEDSVRVWTLGAGAEGECVHELSCNGNKFHSCVFHPTYSDLLVIGCYQSLELWNIAENKTMTVAAHEGLIAALAVSPVTGSVASASHDKYVKLWK 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00753 891 MobiDBLite consensus disorder prediction 86 135 - -
Accr4g00753 891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 692 726 - -
Accr4g00753 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 859 891 IPR001680 GO:0005515
Accr4g00753 891 SMART WD40_4 852 891 IPR001680 GO:0005515
Accr4g00753 891 SMART WD40_4 767 805 IPR001680 GO:0005515
Accr4g00753 891 SMART WD40_4 600 639 IPR001680 GO:0005515
Accr4g00753 891 SMART WD40_4 642 681 IPR001680 GO:0005515
Accr4g00753 891 SMART WD40_4 685 725 IPR001680 GO:0005515
Accr4g00753 891 SMART WD40_4 728 764 IPR001680 GO:0005515
Accr4g00753 891 SMART WD40_4 811 850 IPR001680 GO:0005515
Accr4g00753 891 SUPERFAMILY WD40 repeat-like 601 891 IPR036322 GO:0005515
Accr4g00753 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 692 734 IPR001680 GO:0005515
Accr4g00753 891 FunFam Transcriptional corepressor LEUNIG 735 891 - -
Accr4g00753 891 MobiDBLite consensus disorder prediction 86 178 - -
Accr4g00753 891 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 891 - -
Accr4g00753 891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 859 891 - -
Accr4g00753 891 MobiDBLite consensus disorder prediction 461 521 - -
Accr4g00753 891 CDD WD40 603 891 - -
Accr4g00753 891 SMART Lish 8 40 IPR006594 GO:0005515
Accr4g00753 891 MobiDBLite consensus disorder prediction 413 450 - -
Accr4g00753 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 648 IPR001680 GO:0005515
Accr4g00753 891 Pfam WD domain, G-beta repeat 646 681 IPR001680 GO:0005515
Accr4g00753 891 Pfam WD domain, G-beta repeat 688 725 IPR001680 GO:0005515
Accr4g00753 891 Pfam WD domain, G-beta repeat 610 638 IPR001680 GO:0005515
Accr4g00753 891 Pfam WD domain, G-beta repeat 770 804 IPR001680 GO:0005515
Accr4g00753 891 MobiDBLite consensus disorder prediction 529 554 - -
Accr4g00753 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 774 806 IPR001680 GO:0005515
Accr4g00753 891 ProSitePatterns Trp-Asp (WD) repeats signature. 668 682 IPR019775 -
Accr4g00753 891 MobiDBLite consensus disorder prediction 154 178 - -
Accr4g00753 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 649 684 IPR001680 GO:0005515
Accr4g00753 891 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Accr4g00753 891 Pfam LisH 10 36 IPR006594 GO:0005515
Accr4g00753 891 Gene3D - 740 891 IPR015943 GO:0005515
Accr4g00753 891 Gene3D - 583 739 IPR015943 GO:0005515
Accr4g00753 891 MobiDBLite consensus disorder prediction 136 153 - -
Accr4g00753 891 MobiDBLite consensus disorder prediction 413 554 - -
Accr4g00753 891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 649 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00753 Accr-Chr4 7232304 7252605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00753 652 851 Miscellaneous Gene Families AT5G08390 25.604 2.56e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Accr4g00753 WD40 5.5e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00753 - - gmx:100805628 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00707 3 7940751 7948650 Accr4g00753 4 7232304 7252605 CCT
Accr4g00753 4 7232304 7252605 Accr4g00753 4 7232304 7252605 ECH