Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00742 ATGAACGTTCCCTCACCAAAACTATATCTTGAAGGTTTATACGACACTTGCCCACTGTCGATGGAGAATTCTGGGCCCTTGAACGGCACTCAGTTCGTTGTTGACATAGCTGGAAGTAGTGAAGCTTCCACATCTACCTCTCCACATGATAGACATTTTAACAGCGGAGGTACATCACAACATGAAGACAGACCTAGTAGTACAAGGTTACCAGCTTCTCTTCCTTCAGTTTCTGCTCCTTCTAGTGTTACAAATTCTAGGATTTCTTCAGTTGTAAGACGAGGGGACACCCGTCGGCATAGGAGTCCATTGAATTCAGGGGTATGGATATCTATTGAGCTAGCCCTCACAGTAAGCCAGATTGTTGCATCTATTATAGTTTTGTCTTTGTCAAGGCATGAGCATCCACGCACTCCACTGTTTGAATGGATTGTTGGTTATGCATCGGGATGCGTTGCTACTATCCCCTTGCTTGGTTGGAGGTATTATCATCATAACCTGAGTGGAGAGCGAAATTCATCTCAACCACGTCAAGCTTCCCCTCGAGTTAATGTTTCTTCAAGGACACTTCTTTCTGTTTCAAGAAATAATGGGGGAGAAGACAATCAATCTGTTGTTTCATCCACTAGAAGCAGTCTAGTTTCAGTAATGATGAATCCAAGACTAAAGTCGCTAGTGGAATATTTCAAAATGGCCTTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGCAATGTGTGGATCTTTGGTGGAAACTCGTCCGCTGGTGACGCTCCTAATATGTATAGGTTATGCATTGTGTTTCTGACATTCAGCTGTATTGGCTATGCTATGCCCTTCATTCTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATTCTTGGGGTTAGAGAGGATCTGGCACAAACAAGAGGGGCAACCTCCGAATCTATCAGTGCCCTGCCAACGTACAAGTTCAAGGTGAAGAAACGTAAAAACAGCGATAAAAACAGTGATGAAAACAGCTCAAATGTTTCTGAAGGTGGAATTGTCGCTGGTGGAACTGAAAAGGAGCGTGTGATCTCTGGAGAAGACGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAGTTGCAATGCTCCCATCTTTTTCACAAAGACTGTGTAGACAAGTGGCTCAAGATTAATGCATCATGCCCTCTTTGCAAAAGTGATGTTGGTGGGAACCAAATTGGATCAGTTTCTGGTGAAGGTTCCAACCAACAAAGGGGTGAGAGCAGAGTTGGAGTTAGCCCGATCAATAGCATAGTATAA 1320 0.4348 MNVPSPKLYLEGLYDTCPLSMENSGPLNGTQFVVDIAGSSEASTSTSPHDRHFNSGGTSQHEDRPSSTRLPASLPSVSAPSSVTNSRISSVVRRGDTRRHRSPLNSGVWISIELALTVSQIVASIIVLSLSRHEHPRTPLFEWIVGYASGCVATIPLLGWRYYHHNLSGERNSSQPRQASPRVNVSSRTLLSVSRNNGGEDNQSVVSSTRSSLVSVMMNPRLKSLVEYFKMALDCFFAVWFVVGNVWIFGGNSSAGDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLAQTRGATSESISALPTYKFKVKKRKNSDKNSDENSSNVSEGGIVAGGTEKERVISGEDAVCCICLAKYENNDELRELQCSHLFHKDCVDKWLKINASCPLCKSDVGGNQIGSVSGEGSNQQRGESRVGVSPINSIV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00742 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 412 IPR013083 -
Accr4g00742 439 SMART ring_2 364 404 IPR001841 -
Accr4g00742 439 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Accr4g00742 439 MobiDBLite consensus disorder prediction 39 101 - -
Accr4g00742 439 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 31 408 - -
Accr4g00742 439 MobiDBLite consensus disorder prediction 39 91 - -
Accr4g00742 439 Pfam Ring finger domain 364 405 IPR001841 -
Accr4g00742 439 MobiDBLite consensus disorder prediction 415 439 - -
Accr4g00742 439 FunFam E3 ubiquitin-protein ligase 347 413 - -
Accr4g00742 439 SUPERFAMILY RING/U-box 356 408 - -
Accr4g00742 439 CDD RING-H2_EL5-like 364 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00742 Accr-Chr4 7141430 7144643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00742 54 409 C3H Transcription Factor Family AT1G80400 54.294 5.26e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00742 - - gmx:100778728 582.793