Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00705 ATGGATAAAGATGGTGATAAAAGAGCTGTTGAGAGGAATGTAGTCTCTAGAAAGGGAATGCCTCGTTTATTCAGAAGAAGTCCTCCTAATACTAAGGATCTAGGTGTTCAGTTGTGCAGCCGACCTAATTGCAGCAGCAAGATTTACTCTTCTATAATTGCTGAGAATGGTTCATGTGTGAAAGGTAAACCTTTGAGGTCTCCAATCCAATCTTCTTTAAGTGGAAAGGAAACAGTTGGAAGATCCTGTAGAACTTTCTCAGGAATTAGTAATCCGAGGAAGTCCCTTAAAGAGCCTCAGCAACGAACACTACCCTCTAGATTAGAGACAGATTCATCTGATGCGAGCAGCATACAGGATGAACCTGAAGTTTCAGTTCGTGTCCCTTCTTCTTCGCCTGCAACTTATCAAAGTCAGCTTCAAGCTGAACAAGCACTAGTGAAAGTGGCAAGCACTTGTGGTTTTTCAAGAACAAGGTCACAGAGAAGTTTTCATCAGTCTGGATTGCGTGGTCAAGAAGCTAAAAGCACTGGTTCAGTGACACGTGCTGGTATCAGTCGATATGTCAAGTGCAACTCAATAAATGATGTCAGCTCCACAGATTGTTCTTCTTCAGATTCAACCATTAATAGAAGGAAGGATATGGTGAAGAGAAGAAATTGTGAAAAGCAAAGTAGTTCCTCTGCCAGAGGGAAGAAATTGAGTGGGTCTTTATTGGAAGGACAGAGTTCTAGTTCTGTAAGTGGCATATCTATTTCTGGTCCAAGAAGATCAAGAAATGTTCATGCTCATGTGGACAACATTGCGTCCGTTAGAACTCAAAGGTCTATGAGTGGTAGAGCTGGGGAAGGGCTTCCAAGACGTAGACCAGGGTCAAGCAACAGACCACCTTCATCTCCTTCAGAATCTGACACCACTCGTCCTCTAATAAATCAGAGTAGAAGACGGTACCAAAACAGTATTGCTGAGGTATTATTAGAACTTGAGAGGATTGAACAAGGCGAAGAGCTGACAGAGGAGGAAATTCATTTACTAGAGACAAATTTCCTTCTTAACGGACTATACTCGTATGATCAGCATAGAGACATGCGTATGGATATTGATAATATGTCATATGAGGAACTATTAGCCCTGGAAGAAAGGATGGGTACTGTGAGCACAGCTTTAACAGAGGAAGCACTGTCAGAATGTCTTAAGAGAAGCATCTTTCAGCCTACACCTTCAAACGAGGAGGAGGACCACGAGATGAACAAAAATACCATTAATGATGTTATCAAATGCAGTATCTGCCAGGATGAATATGTGGTTGGAGATGAATTGGGGGGTCTGAAATGTGAGCATAGATATCATGTAGCTTGCATACAACAGTGGCTTCGCCTCAAGAACTGGTGCCCTATCTGCAAAGCATCAGCAGCACCTTCAAGTTCATCTGTTGCCTCTAATCAGGACTGA 1452 0.4242 MDKDGDKRAVERNVVSRKGMPRLFRRSPPNTKDLGVQLCSRPNCSSKIYSSIIAENGSCVKGKPLRSPIQSSLSGKETVGRSCRTFSGISNPRKSLKEPQQRTLPSRLETDSSDASSIQDEPEVSVRVPSSSPATYQSQLQAEQALVKVASTCGFSRTRSQRSFHQSGLRGQEAKSTGSVTRAGISRYVKCNSINDVSSTDCSSSDSTINRRKDMVKRRNCEKQSSSSARGKKLSGSLLEGQSSSSVSGISISGPRRSRNVHAHVDNIASVRTQRSMSGRAGEGLPRRRPGSSNRPPSSPSESDTTRPLINQSRRRYQNSIAEVLLELERIEQGEELTEEEIHLLETNFLLNGLYSYDQHRDMRMDIDNMSYEELLALEERMGTVSTALTEEALSECLKRSIFQPTPSNEEEDHEMNKNTINDVIKCSICQDEYVVGDELGGLKCEHRYHVACIQQWLRLKNWCPICKASAAPSSSSVASNQD 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00705 483 MobiDBLite consensus disorder prediction 160 180 - -
Accr4g00705 483 MobiDBLite consensus disorder prediction 1 15 - -
Accr4g00705 483 MobiDBLite consensus disorder prediction 63 132 - -
Accr4g00705 483 SMART ring_2 427 467 IPR001841 -
Accr4g00705 483 ProSiteProfiles Zinc finger RING-type profile. 427 468 IPR001841 -
Accr4g00705 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 481 IPR013083 -
Accr4g00705 483 MobiDBLite consensus disorder prediction 198 314 - -
Accr4g00705 483 Pfam Ring finger domain 426 468 IPR001841 -
Accr4g00705 483 Coils Coil 328 348 - -
Accr4g00705 483 MobiDBLite consensus disorder prediction 1 33 - -
Accr4g00705 483 MobiDBLite consensus disorder prediction 65 132 - -
Accr4g00705 483 MobiDBLite consensus disorder prediction 227 255 - -
Accr4g00705 483 FunFam E3 ubiquitin-protein ligase arkadia 386 473 - -
Accr4g00705 483 MobiDBLite consensus disorder prediction 207 226 - -
Accr4g00705 483 SUPERFAMILY RING/U-box 426 472 - -
Accr4g00705 483 MobiDBLite consensus disorder prediction 292 314 - -
Accr4g00705 483 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 82 472 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00705 Accr-Chr4 6782547 6784837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00705 321 471 C3H Transcription Factor Family AT2G15530 42.763 5.09e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00705 - - gmx:100787213 383.645