Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00633 ATGAGTGGGTGTTTGGTGGTGTTCGTTATGATTCTTTCATTGCCGTTGGATGTGAAATCCCAGGGAGCACCAGAGAGCATGCAAGATAATATGCCTCAAAACATCCATCCAAGTAAAGGAGTTATAATAGCAATCCTCACTGTTATGTTTGTGATATCATTTCTCCTTATGGCTTATGTAAAGTTCTGTAAAATCCGGTCCCCTGATTCCCTTAACCTAGATATGAACGATCGGGGAATAGGCCAATCCAGGTCAGGATATTCCGGGATAGACAAACAAGTAATCGAATCACTGCCTTTTTTCAAGTTCTCTTCCCTCAAGGGCTCAAAAGAAGGCCTAGAATGTGCCGTTTGCTTGTCGAAATTCGACGACGCCGAGGTTCTTAGGTTGCTGCCCAAGTGTAAGCATGCTTTTCACATGAATTGCATCGACAAGTGGCTTGAATATCACTCGACATGTCCCCTTTGCAGGTACAAGGTTGACCCTGAGGACATCAAGACATTCAATTCCTCCATCAGCTCCAGGTTCCTTCGAGTTCCTTCCGACATAACAGAGGTCCCTGAACTTGAAATCTCCGTCCAGAGGGATCAATCGAACCAGAACTCAAACATATTTAACAATCGGAAACCTGCGCACAGGCTCAATCATAAAATAGTCATATCCGATGTTGCTACGAGGAGCAGGTGGAGTGATCTGAATTCCTCGGACTTGCTGTCGTTGAATTCTGAGATTCTCAGTGCGATGTCAAGCGCGACATTCTCTGGTTCCAACGAGGAAGACAACTCGTTTACGTTGTTGACTGGTCCAGGAGAGAAGAGATCTATGTCGGAGATTGCCAACGTGGCGAGATTTGCAGAAATTAGAGCGGAGAACAATGTGAGAGAAGAGAGAGTGAGAAGGATTTGGTTGCCGATGGTGGAGCGAACAGTGCAGTGGTTTGCGGGACGAGAGAGCGTATTATCGACAGAGTCGAAACACAAAGGATTTGCTTCAAATGTTTGA 1002 0.4551 MSGCLVVFVMILSLPLDVKSQGAPESMQDNMPQNIHPSKGVIIAILTVMFVISFLLMAYVKFCKIRSPDSLNLDMNDRGIGQSRSGYSGIDKQVIESLPFFKFSSLKGSKEGLECAVCLSKFDDAEVLRLLPKCKHAFHMNCIDKWLEYHSTCPLCRYKVDPEDIKTFNSSISSRFLRVPSDITEVPELEISVQRDQSNQNSNIFNNRKPAHRLNHKIVISDVATRSRWSDLNSSDLLSLNSEILSAMSSATFSGSNEEDNSFTLLTGPGEKRSMSEIANVARFAEIRAENNVREERVRRIWLPMVERTVQWFAGRESVLSTESKHKGFASNV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00633 333 CDD RING-H2_EL5-like 114 157 - -
Accr4g00633 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 317 - -
Accr4g00633 333 FunFam RING-H2 finger protein ATL43 90 164 - -
Accr4g00633 333 Pfam Ring finger domain 114 157 IPR001841 -
Accr4g00633 333 SMART ring_2 115 156 IPR001841 -
Accr4g00633 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 165 IPR013083 -
Accr4g00633 333 SUPERFAMILY RING/U-box 93 162 - -
Accr4g00633 333 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00633 Accr-Chr4 6162718 6163719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00633 37 317 C3H Transcription Factor Family AT2G20030 38.462 1.69e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00633 K10664 - gmx:100816668 329.331