Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00614 ATGGCCTCCACAGTCGATTCCTTTATCGTCGAAGACCTTCTTGACTTCCCCAATGACGAAGAACTTCTCCTCCTCGACGACGCTTCCTTTCCTTCATTCCCCGCCCACTTAACCAATTCTTCCACCCTCACCACCGCCGCCGCCGCCACCTCCCCGGGCTCTCTCCCTAATGATACCGTCGCCGCTAATATTGACTGCCTCAGTTTCCAAGACCCTCACTTTTCCGGCGACCTCTGCTTCCCCTTGCTGTATGATGATGACATGGCTGGATTGGAATGGCTTTCAAACGGGGAGGAATCATTTTCGGCCGAGGAGCTGCTGCAGCTCCAGTTGATATCGGGGATGAAGTCCCGAAACGACGTGGTCGAGGCATCCGATACCCATGAATTCCAGACTGAAACCAACCGAAGCTTCAACAACAACAACAACCCTATATTCAACTCTGGCGTCTCTGTTCCGGCCAAAGCACGCAGCAAGCGCTCACGTGGCTCTCCATGCACGTGGACCTCTTGTCTCCTCCTCCTTTCTCTGTCTCAATCTCCAACGCCATCTCTATCCTCCACGTCATCTTCCTCGGACCGCGATCCTGTCCCCGTCTCCATCCCCGTCCCCGTCCAATCCACCGGAAAGAAGCCGGGGAAGGTGGTGTCAAGGCGGAAGGACAGCTGCGAGGATCGCCGGTGCCTGCATTGTGCTACAGATAAGACACCACAGTGGCGGACCGGACCCATGGGCCCCAAGACGCTTTGCAACGCATGTGGGGTGAGGTACAAGTCAGGGAGGCTGGTGCCAGAGTACCGGCCGGCAGCGAGCCCGACGTTTGTACTGACAAAGCATTCAAACTCGCACCGCAAGGTGATGGAGCTCCGGCGTCAGAAGGAAGTGCAGCAGCAGCACCAACACCATCAGTTTCTGCACCATCCCAATATGCTGTTTGAGTTTCATATATCCAATGGGGACGATTACCTGATCCATCAACACATGAGCCCTGACTTCAGTCAGCTCATTTAG 1011 0.5539 MASTVDSFIVEDLLDFPNDEELLLLDDASFPSFPAHLTNSSTLTTAAAATSPGSLPNDTVAANIDCLSFQDPHFSGDLCFPLLYDDDMAGLEWLSNGEESFSAEELLQLQLISGMKSRNDVVEASDTHEFQTETNRSFNNNNNPIFNSGVSVPAKARSKRSRGSPCTWTSCLLLLSLSQSPTPSLSSTSSSSDRDPVPVSIPVPVQSTGKKPGKVVSRRKDSCEDRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEVQQQHQHHQFLHHPNMLFEFHISNGDDYLIHQHMSPDFSQLI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00614 336 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Accr4g00614 336 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Accr4g00614 336 SMART GATA_3 222 272 IPR000679 GO:0006355|GO:0043565
Accr4g00614 336 MobiDBLite consensus disorder prediction 180 218 - -
Accr4g00614 336 MobiDBLite consensus disorder prediction 134 163 - -
Accr4g00614 336 PIRSF Txn_fac_GATA_plant 1 317 IPR016679 GO:0003677|GO:0005634|GO:0045893
Accr4g00614 336 Gene3D - 223 304 IPR013088 GO:0006355|GO:0008270
Accr4g00614 336 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Accr4g00614 336 MobiDBLite consensus disorder prediction 134 149 - -
Accr4g00614 336 PANTHER GATA TRANSCRIPTION FACTOR 10 300 - -
Accr4g00614 336 MobiDBLite consensus disorder prediction 180 196 - -
Accr4g00614 336 FunFam GATA transcription factor 219 303 - -
Accr4g00614 336 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 225 286 - -
Accr4g00614 336 CDD ZnF_GATA 227 274 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00614 Accr-Chr4 6024183 6025551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00614 74 336 C2C2-Gata Transcription Factor Family AT5G25830 55.197 3.00e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr4g00614 GATA 3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00614 - - minc:123193994 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00614 4 6024183 6025551 Accr4g00614 4 6024183 6025551 ECH