Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr4g00591 | ATGTCTTCCCGGCAAATATCCAAACCACATCAACAAATTGGAACGTCCCAAATGTCCAGAATTCCCCTACTTGGTTTTCCTTTTCGAGTGCTTTTCTACGTCCTCCTCAGCTTCTCTGTGACCTCTAGTGCAGATTCGCGAACCACAGGCTCCGAACAGAACATCCTACTAAACGTTAAACATCAACTGGGCAATCCACCGTCGCTTCGGACGTGGACCTCATCATCCTCGCCGTGCGACTGGCCAGAGATACGTTGCACCGATGGCGTCGTTACTCAGGTTCTTATCTCAGGAAAAGGTGTCTCCCGGAAGCTACCGCCAGCGATCTGCGACCTCAAGAATTTGACGAAGCTCGACCTCTCAAACAACAACATCAACGGAGAGTTTCCGAGATTTTTGTACAATTGCTCCAACCTCCAATTCCTTGCCCTCTCTCAAAATTACTTTGCTGGCCCAATCCCCGACGACATTGACAGACTCAAAACTCTGACGTTCTTAGACCTTAGTGGCAACTCTTTTTCTGGCGATGTCCCGGTGGCCATCGGGAGATTATCGGAGTTACAAACGTTGTACCTCCACAGCAACGAATTTGATGGAACTTTTCCCAAAGAAATTGGGAGCTTATCTAATCTCGAAATTCTCGGTTTGGCCTATAATGACAAATTTGTGCCCATGGCAATCCCATCGGAGTTTGGGAACTTGACGAATTTAACGTTCATCTGGATGGCAGGCTGCAATCTAATCGGTGAAGTTCCTGAAAGTTTTGCCAATCTAACGAATATCGTGAAATTGGATTTGTCAATGAACAATTTGACAGGCAGCATTCCCAGTAGTTTGTTCTCTCTCAAGAATTTACAATTTCTTTATCTCTACCACAACAGATTGTCTGGTGAAATACCTAGTTCGATCCAGGCTTTGAATTTGATTGGCATTGATCTAGCAATGAACAATTTCACAGGTCCGATTCCTGAAGATTTTGGAAAGTTGGAGAACTTGACGACACTTCTCCTGTATTTCAATCAATTATCAGGGCAGATTCCGAGAAGTTTAGGCCTGATCAAAACGCTGAAGTACTTCAGGATTTTTGGCAATAAGTTGAATGGAACTCTTCCTCCTGAACTAGGCCTATATTCAAAGCTTGAAGCGTTTGAAGTCGCAGACAATCAACTGAGTGGTGTATTGCCTCAATATTTGTGTGCCAATAATGCCTTGCAAGGTGTGATTGCTTTTTCTAACAATCTTAGTGGAAGATTGCCCGAATCACTAGGAAATTGCACAACTCTGCGCACAATTCAGCTTTACAGAAACAATTTTTCTGGTGAGGTTCCTTTAAGTGTCTGGACTTCCAAGAATTTATCAACCTTGGTGTTGAGCGAGAACTCGTTTTCTGGTCAACTTCCTAGTAAACTTCCATGGAATATGTCGAGACTGGAAATCAGGAATAACTACTTTTCAGGAGACATATCGGTTGGAATTGTTTCCGCAGTAGATCTAGTTGTATTTGATGCGAGAAACAATATGCTTTCTGGTAAAATTCCCAAGGAGTTGACGGCTCTTTCCCGGCTTAATTCTCTCAGGCTTGACAATAATCAACTTTCCGGTGAACTACCATCCGAGATCGTCTCCTGGCAATCCCTGAATACTTTAACACTCTCAAGCAACAAACTGTCTGGGAAAATTCCGGAAACTATTGGTGATCTCCCTGATCTTGTTGACTTGGACTTGTCTAAAAATGATATATCTGGTGAAATCCCGCCTCAGCTTGGCAATATGAGGCTCATTTTTCTCAACTTGTCCTCCAACAACCTTTCTGGTAGCATCCCAGATGTTTTCAATAACCTCGCATATGACACCAGCTTCTTGAACAATCCCAATCTATGCGCTTATAATCCAAACATCAAACTTCCAAAATGCTTGACCAAAACTCCTCGGTATCCAAACAAATCGTCCAAGTTGCTTGTCTTGATTCTTGTTCTCACCATAATTGTGCTGCTAGCCACTGCCTCACTGGCCTTCTACAAGTTCAAATACATCTCAGGAAAGAATTCCAGGCGCAACCTTTCAACGTGGAAGCTTACTTCATTCCAGAGGCTAGATTTCTCAGAATGGAATCTCTTCTCAAACCTGACAGATGATAACCTCATTGGAAGCGGGGGCTTTGGAAAAGTTTACCGGGTTCCCTCTAATCGTCCGGGTGAGTATGTTGCTGTAAAAAGGATTTGGAATAGCAAAAGGTTGGATGATAATCTAGAGCGAGACTTTATGTCTGAAGCTGAAATCCTAGGCACAATTCGGCATTCCAATATTGTGAAGCTCCTGTGCTACATTTCAAGTGAAAACTCAAAAATCCTTGTGTATGAATACAAGGAAAATAGGAGCCTTGATAAATGGCTTCATGGAAAGAGACAAGCATCGACCCCACCCAACAATCATCTGATCTTGAAGTGGCCAACAAGGTTGAAGATTGCCATTGGGGCCGCGCAAGGACTGTGTTACATGCACCACGATTGCTCTCCACCAATCATGCATAGAGACATAAAGTGCAGCAACATATTACTGGACTCTGAATTCCGGGCGAGTATTGCAGACTTTGGGCTAGCCAGGATGTTGGCAAAATCTGGGGAGCCGCATAGCTTGTCTGCGATAGCGGGATCTTTCGGCTACATACCCCCAGAATATGCATATTCAACCAAGATCAACGAGAAAGTGGATGTATATAGTTTTGGGGTGGTACTACTGGAGCTTGTAACAGGAAAAGAACCCTATTGCACAGAGGAAAGCACAAGCCTAGTAGATTGGGCATGGCAGCATCACAGTGAAGAGAAGCGCCTTGTTGATGCCTTGGACGAAGAAATCAAAGAAGCTTGTCATGTGGAAGAGATGATAAAGGTCTTTAAATTAGGCCTAGCTTGCACAAGCTTATCACCCGCAGCTAGACCTTCCATGAGAGAGATTTTGCGGGTTCTTCAGCAGTGTTGTCGACCAGATCATGACGGTAAGAAAATCGGAACTGAGTTTGATATTGCTCCCCTTCTTCGCGATTCCACGTACATTTCTAATTACAAGGATAGTAGCACGGCTATATGTGAAAGTGATGAGAGTTACTTCTGA | 3111 | 0.4375 | MSSRQISKPHQQIGTSQMSRIPLLGFPFRVLFYVLLSFSVTSSADSRTTGSEQNILLNVKHQLGNPPSLRTWTSSSSPCDWPEIRCTDGVVTQVLISGKGVSRKLPPAICDLKNLTKLDLSNNNINGEFPRFLYNCSNLQFLALSQNYFAGPIPDDIDRLKTLTFLDLSGNSFSGDVPVAIGRLSELQTLYLHSNEFDGTFPKEIGSLSNLEILGLAYNDKFVPMAIPSEFGNLTNLTFIWMAGCNLIGEVPESFANLTNIVKLDLSMNNLTGSIPSSLFSLKNLQFLYLYHNRLSGEIPSSIQALNLIGIDLAMNNFTGPIPEDFGKLENLTTLLLYFNQLSGQIPRSLGLIKTLKYFRIFGNKLNGTLPPELGLYSKLEAFEVADNQLSGVLPQYLCANNALQGVIAFSNNLSGRLPESLGNCTTLRTIQLYRNNFSGEVPLSVWTSKNLSTLVLSENSFSGQLPSKLPWNMSRLEIRNNYFSGDISVGIVSAVDLVVFDARNNMLSGKIPKELTALSRLNSLRLDNNQLSGELPSEIVSWQSLNTLTLSSNKLSGKIPETIGDLPDLVDLDLSKNDISGEIPPQLGNMRLIFLNLSSNNLSGSIPDVFNNLAYDTSFLNNPNLCAYNPNIKLPKCLTKTPRYPNKSSKLLVLILVLTIIVLLATASLAFYKFKYISGKNSRRNLSTWKLTSFQRLDFSEWNLFSNLTDDNLIGSGGFGKVYRVPSNRPGEYVAVKRIWNSKRLDDNLERDFMSEAEILGTIRHSNIVKLLCYISSENSKILVYEYKENRSLDKWLHGKRQASTPPNNHLILKWPTRLKIAIGAAQGLCYMHHDCSPPIMHRDIKCSNILLDSEFRASIADFGLARMLAKSGEPHSLSAIAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGKEPYCTEESTSLVDWAWQHHSEEKRLVDALDEEIKEACHVEEMIKVFKLGLACTSLSPAARPSMREILRVLQQCCRPDHDGKKIGTEFDIAPLLRDSTYISNYKDSSTAICESDESYF | 1036 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr4g00591 | 1036 | FunFam | Kinase family with leucine-rich repeat domain-containing protein | 789 | 1005 | - | - | |
| Accr4g00591 | 1036 | Pfam | Leucine rich repeat | 252 | 295 | IPR001611 | GO:0005515 | |
| Accr4g00591 | 1036 | Pfam | Leucine rich repeat | 520 | 580 | IPR001611 | GO:0005515 | |
| Accr4g00591 | 1036 | Pfam | Leucine rich repeat | 114 | 172 | IPR001611 | GO:0005515 | |
| Accr4g00591 | 1036 | ProSiteProfiles | Protein kinase domain profile. | 709 | 1000 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Accr4g00591 | 1036 | ProSitePatterns | Protein kinases ATP-binding region signature. | 715 | 738 | IPR017441 | GO:0005524 | |
| Accr4g00591 | 1036 | Gene3D | Ribonuclease Inhibitor | 49 | 224 | IPR032675 | - | |
| Accr4g00591 | 1036 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 202 | 299 | - | - | |
| Accr4g00591 | 1036 | SMART | LRR_typ_2 | 184 | 208 | IPR003591 | - | |
| Accr4g00591 | 1036 | SMART | LRR_typ_2 | 258 | 282 | IPR003591 | - | |
| Accr4g00591 | 1036 | SMART | LRR_typ_2 | 567 | 591 | IPR003591 | - | |
| Accr4g00591 | 1036 | SMART | LRR_typ_2 | 519 | 543 | IPR003591 | - | |
| Accr4g00591 | 1036 | SMART | LRR_typ_2 | 112 | 136 | IPR003591 | - | |
| Accr4g00591 | 1036 | SMART | LRR_typ_2 | 329 | 353 | IPR003591 | - | |
| Accr4g00591 | 1036 | Gene3D | Ribonuclease Inhibitor | 225 | 306 | IPR032675 | - | |
| Accr4g00591 | 1036 | Gene3D | Ribonuclease Inhibitor | 307 | 398 | IPR032675 | - | |
| Accr4g00591 | 1036 | FunFam | Kinase family with leucine-rich repeat domain-containing protein | 691 | 788 | - | - | |
| Accr4g00591 | 1036 | Pfam | Leucine rich repeat N-terminal domain | 53 | 86 | IPR013210 | - | |
| Accr4g00591 | 1036 | Pfam | Protein kinase domain | 711 | 987 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Accr4g00591 | 1036 | Gene3D | Ribonuclease Inhibitor | 399 | 644 | IPR032675 | - | |
| Accr4g00591 | 1036 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 227 | 984 | - | - | |
| Accr4g00591 | 1036 | Gene3D | Phosphorylase Kinase; domain 1 | 692 | 788 | - | - | |
| Accr4g00591 | 1036 | SUPERFAMILY | L domain-like | 411 | 627 | - | - | |
| Accr4g00591 | 1036 | FunFam | Leucine-rich repeat receptor-like protein kinase TDR | 326 | 640 | - | - | |
| Accr4g00591 | 1036 | Gene3D | Transferase(Phosphotransferase) domain 1 | 790 | 1005 | - | - | |
| Accr4g00591 | 1036 | SUPERFAMILY | Protein kinase-like (PK-like) | 699 | 989 | IPR011009 | - | |
| Accr4g00591 | 1036 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 841 | 853 | IPR008271 | GO:0004672|GO:0006468 | |
| Accr4g00591 | 1036 | SMART | serkin_6 | 709 | 989 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Accr4g00591 | 1036 | SUPERFAMILY | RNI-like | 100 | 441 | - | - | |
| Accr4g00591 | 1036 | FunFam | Receptor-like protein kinase HSL1 isoform A | 49 | 199 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr4g00591 | Accr-Chr4 | 5818456 | 5821655 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr4g00591 | 51 | 1012 | Receptor kinase-like Gene Family | AT5G25930 | 55.130 | 0.0 | 1043 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Accr4g00591 | Pkinase | 3.8e-46 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr4g00591 | - | - | adu:107461025 | 1303.5 |