Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00578 ATGTCTTGTATTCCACTGGTCTTCAGTGTTAAGACCAATCAGTCTCAATTTTTTGTTTTCATGAAGGAGTCCTTCTCCGGTAAGTTCCCGTCCAGTTGGGATGTCGCTGGAGGAAAACCTGTTTGCACCTTCACTGGGGTTGCCTGCAACGACCGAGGAGACGTCGTCAGTCTTGACGTCTCCGGTTGGTCACTCTCCGGGGACTTGCCTGAAAATATATGCTCTTATTACTTGCCTGAGTTACGTGTTCTTCGTCTCAGCAATAACCGCCTGAAGAAAAACTTGTTTCCTGACTCCATACTCAACTGTTCCCATTTGGAAGAGCTTAACATGAGCTACATGCTTCTTTCTGGGAAGCTTTCTGATTTCTCACCTCTTCAGACATCTCTCAAGGTTCTTGATTTGTCGTATAACGTTTTCACGGGTCGGTTTCCCATGTCTGTGTTCAATCTGTCCAGACTCGAGGTCCTTAACTTCAACGAAAATGAAGGCTTCGACTTCTGGACACTTCCAAAGGATGTTCACAACCTCATTAATCTCAACTCTATGGTGCTCACAACATGCATGTTACAAGGCCAAATTCCAGCTTCCTTAGGAAACCTCACGTCTCTTGTTGATCTTGAGTTGAGTGGAAACTTCCTCACTGGTCATATTCCTCCAGAGCTTGGAATGCTGAAAAATTTGCAATATCTCGAGCTTTACTATAACAGTCTTGTTGGTGCTATACCCGAGGAGCTAGGAAATCTAATGGAGCTCAAAGACTTTGATTTGTCGGTTAACAAGTTGACCGGGAAAATCCCAGAATCTATATGTCGCCTTCCCAAGCTTGAAGTCATGCAGCTTTACAACAATAGCCTCACAGGTGAAATCCCAGCTGTGATAGCCAACTCAACATCCTTGAGAATATTGTCTATTTATGACAACTTCCTGAGTGGTCATGTCCCAAGAAATCTGGGTCAGTTCTCAGAATTGGTAGTTTTAGACATGTCTGAAAACCAATTATCTGGTCCTTTGCCGACAGAGGTTTGCAGGGGAGGTAAACTGCTCTATTTTCTTGTTCTGGATAATCAGTTTTCTGGAGAGCTACCTGAAGTTTATGCAAAATGCTCGACTCTTTTGAGGTTCAGAGTGAGCAGTAACCACTTGCAGGGCCCCGTTCCTGAGGATATCTTTGGCTTGCCACATGTTTCAATTATTGATTTGGGATACAACAATTTTTCTGGTTCCATTTCTGAGTCCATTGGAAATTCAAGAAACTTGTCAGAGCTTTTCCTACAGAAGAATCGAATTTCTGGTTCAATTCCTCCTACCATCTCTCGTGCTAGCAATCTGGTCAAGATTGATCTCAGTTACAACCTTTTGTCTGGTTCAATACCTTCTGGAATTGGAAACCTGAAGAGGCTTAATTCACTGATGCTGCAAGGAAACAAGCTAAGTTCTTCCATTCCCAGCTCACTTTCCTTGTTACAGTCCCTCAACGTTCTTGATCTCTCCAACAACCTCTTGAGTGGGACCATCTATGATAGTCTGTCTTCACTCTTACCCAATTATATCAATTTCTCAAACAATTTGCTTTCTGGTCCAATTCCTTCCTCATTGATGAAAGGAGGGCTATTAGAAAACTTTTCAGGGAATCCTGGTCTCTGTGTGTTGCCGGTTTATTCTAACTCATCATACCAGAATTTCCCTGTGTGTTCACAAAGTAGCAGCAGAAAAAGGCTAAGTGTCATATGGGTAGGTGCAATTGCAGTAGCTTTGGTCATCATTGTATTTGGAGCTGTATTGGCTTTTATAAGGCGTAGGCCAACCAAAGATAAGTCAACCAAGGGACAAGATGATGAGTCACTGTCTTCTTCATTCTTCTCCTATGACTTGAAGAGCTTCCACAAGTTAAATTATGATCGGCAGGAGATAACTGAGGCCATGGTGGACAAGAATATAGTGGGATACGGTGGATCGGGGACAGTGTACAAGATTGAGTTAAAGAGTGGTGAACTTGTTGCAGTCAAGAAGCTATGGAGTCGAACATCAAATGATTCAGCTCAAGAGGATCGCATGGGGTTGGACAAGGAGTTGAAAAATGAGGTGGCAACCTTAGGAAATATAAGACACAAGAACATAGTTAAACTGTACAGCTACTTCGCTAGCTTGGACTTCAGCTTGTTGGTTTATGAGTACATGTCAAATGGTAATCTCTGGGATGCCCTGCACAAAAGCTGGATCAACTTGACTTGGCCTACACGTCATCAGATCGCGCTAGGGGTAGCACAAGGCTTAGCATATCTCCACCATGATCTGCTTCCTCCAATTATTCACAGAGACATCAAGTCTACAAACATCCTTCTGGATGCTCATTACCAGCCCAAAGTTGCAGATTTCGGAATTGCTAAGGTTTTACAAGCAAGAGGAGGCAGAGATTCCACCACAACTGTGATTGCAGGAACCTATGGTTACTTAGCTCCAGAATATGCATATTCATCAAGAGCAACAACCAAGTGTGATGTCTACAGTTTTGGCGTAATTCTTATGGAACTGATAACTGGAAAGAAGCCTGTAGAGGCAGAGTTTGGAGAGAACAGGAATATTGTATATTGGGTTTCAAACAAAGTAGACAGCAGAGAAGGGATTAATGAAATAATAGACAAGAGATTATCAGGTTTATTCATGGAGGAGATTATACAAGTGATCGGAATTGCCATTAAGTGCACCTACAAATCTCCTGCTAATAGACCAACCATGAAAGATGTGGTTCAGCGACTTATTGAAGCAGACCCATGCAAATACGATTCTGGTAAGTTGCCAGACAAGACCAGTACCAAATAA 2823 0.4265 MSCIPLVFSVKTNQSQFFVFMKESFSGKFPSSWDVAGGKPVCTFTGVACNDRGDVVSLDVSGWSLSGDLPENICSYYLPELRVLRLSNNRLKKNLFPDSILNCSHLEELNMSYMLLSGKLSDFSPLQTSLKVLDLSYNVFTGRFPMSVFNLSRLEVLNFNENEGFDFWTLPKDVHNLINLNSMVLTTCMLQGQIPASLGNLTSLVDLELSGNFLTGHIPPELGMLKNLQYLELYYNSLVGAIPEELGNLMELKDFDLSVNKLTGKIPESICRLPKLEVMQLYNNSLTGEIPAVIANSTSLRILSIYDNFLSGHVPRNLGQFSELVVLDMSENQLSGPLPTEVCRGGKLLYFLVLDNQFSGELPEVYAKCSTLLRFRVSSNHLQGPVPEDIFGLPHVSIIDLGYNNFSGSISESIGNSRNLSELFLQKNRISGSIPPTISRASNLVKIDLSYNLLSGSIPSGIGNLKRLNSLMLQGNKLSSSIPSSLSLLQSLNVLDLSNNLLSGTIYDSLSSLLPNYINFSNNLLSGPIPSSLMKGGLLENFSGNPGLCVLPVYSNSSYQNFPVCSQSSSRKRLSVIWVGAIAVALVIIVFGAVLAFIRRRPTKDKSTKGQDDESLSSSFFSYDLKSFHKLNYDRQEITEAMVDKNIVGYGGSGTVYKIELKSGELVAVKKLWSRTSNDSAQEDRMGLDKELKNEVATLGNIRHKNIVKLYSYFASLDFSLLVYEYMSNGNLWDALHKSWINLTWPTRHQIALGVAQGLAYLHHDLLPPIIHRDIKSTNILLDAHYQPKVADFGIAKVLQARGGRDSTTTVIAGTYGYLAPEYAYSSRATTKCDVYSFGVILMELITGKKPVEAEFGENRNIVYWVSNKVDSREGINEIIDKRLSGLFMEEIIQVIGIAIKCTYKSPANRPTMKDVVQRLIEADPCKYDSGKLPDKTSTK 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00578 940 Gene3D Ribonuclease Inhibitor 281 559 IPR032675 -
Accr4g00578 940 SMART serkin_6 642 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g00578 940 SMART LRR_typ_2 465 489 IPR003591 -
Accr4g00578 940 SMART LRR_typ_2 201 224 IPR003591 -
Accr4g00578 940 SMART LRR_typ_2 225 249 IPR003591 -
Accr4g00578 940 SMART LRR_typ_2 78 103 IPR003591 -
Accr4g00578 940 SMART LRR_typ_2 321 345 IPR003591 -
Accr4g00578 940 SMART LRR_typ_2 273 297 IPR003591 -
Accr4g00578 940 Gene3D Transferase(Phosphotransferase) domain 1 727 930 - -
Accr4g00578 940 SUPERFAMILY L domain-like 54 339 - -
Accr4g00578 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Accr4g00578 940 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 174 921 - -
Accr4g00578 940 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Accr4g00578 940 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 727 938 - -
Accr4g00578 940 Pfam Leucine rich repeat 418 478 IPR001611 GO:0005515
Accr4g00578 940 PRINTS Leucine-rich repeat signature 324 337 - -
Accr4g00578 940 PRINTS Leucine-rich repeat signature 489 502 - -
Accr4g00578 940 Pfam Protein kinase domain 644 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g00578 940 Gene3D Ribonuclease Inhibitor 13 165 IPR032675 -
Accr4g00578 940 Gene3D Phosphorylase Kinase; domain 1 625 726 - -
Accr4g00578 940 SUPERFAMILY L domain-like 275 533 - -
Accr4g00578 940 FunFam receptor protein-tyrosine kinase CEPR1 625 726 - -
Accr4g00578 940 FunFam Leucine-rich repeat receptor-like protein kinase 167 269 - -
Accr4g00578 940 SUPERFAMILY Protein kinase-like (PK-like) 631 920 IPR011009 -
Accr4g00578 940 FunFam Receptor protein-tyrosine kinase CEPR1 273 559 - -
Accr4g00578 940 Gene3D Ribonuclease Inhibitor 166 280 IPR032675 -
Accr4g00578 940 ProSiteProfiles Protein kinase domain profile. 642 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00578 Accr-Chr4 5696726 5699710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00578 14 925 Receptor kinase-like Gene Family AT5G49660 63.388 0.0 1160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr4g00578 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00578 - - qsa:O6P43_015448 1271.91