Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00567 ATGTCTACACTGCTGCTCGGCATAGGGGAGGACAAAGGTCAGAGCGATGTCAATTTGTTGGGTTCCTCAACCACCATGGAAAGTGTGTGCCTCAACAACTCCAAACTGAAAGAACGCAACTACATGGGATTATCTGATTGTTCTTCAGTGGACAGCTCTGCTCAGTCCTTCTCTGGCGAGAGTAAAACTAGGCTGAACCTAAAAGCTACAGAGCTAAGGCTTGGGCTTCCGGGATCTCAGTCTCCTGAAAGAGAAGACTCAGATCATCGCTCCTTTGAAAGTTCAACTCAATTTGATGAGAAACCTCTTTTCCCCTTGCACCCTTCAACAGATGATCAACACCGCTCGTCAAAGAATGTTGTTTTGGGTAATAAAAGAGGGTTCTCAGATGCTATGAATGAGTTCTCCAAGGGGCAATTCCTAGCAAATTCGGAGGCGAATAGGATTTTGTCACCTAGACCCTCTCCTAATTTAGGATTGAAAACTAGTCCTGTGCTTGATAAAACGAAAGAAGCAGCACCACCAAAGGTGGAACAAGAGATTCCCCATGTTGTGAACGAAACAAAATCTAACCATAATGTTTCTGCAAATAACAGCAGCACACCTGCTACTAAGGGACAGGTTGTGGGTTGGCCTCCTATTAGATCATTTAGGAAAAATTCATTGGCTACCACTACGAAAAATACTGAAGTAGTAGATGGAAAAGCACTGTTTGTCAAGGTCAGTATGGATGGTGCTCCATATTTGAGGAAAGTAGACTTGAAAAATTACAGTGCATATCCAGAACTATCTTCTTCTCTGGAGAAGATGTTCAGTTGTTTTACCATAGGTCCATGTGGATCTAACGGAACTCTGGGTAAGGGGATGCTGAATGAAACCAAGATGAGGGATCTGCTTCGAGGGTCTGAATATGTTCTTACTTATGAGGACAAAGATGGTGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTGTTGAAACATGCAGGAGGATGAGGATCATGAAGAGTTCTGAAGCCATAGGCTTAGCTCCCAGAAAGAAATAA 1050 0.4362 MSTLLLGIGEDKGQSDVNLLGSSTTMESVCLNNSKLKERNYMGLSDCSSVDSSAQSFSGESKTRLNLKATELRLGLPGSQSPEREDSDHRSFESSTQFDEKPLFPLHPSTDDQHRSSKNVVLGNKRGFSDAMNEFSKGQFLANSEANRILSPRPSPNLGLKTSPVLDKTKEAAPPKVEQEIPHVVNETKSNHNVSANNSSTPATKGQVVGWPPIRSFRKNSLATTTKNTEVVDGKALFVKVSMDGAPYLRKVDLKNYSAYPELSSSLEKMFSCFTIGPCGSNGTLGKGMLNETKMRDLLRGSEYVLTYEDKDGDWMLVGDVPWEMFVETCRRMRIMKSSEAIGLAPRKK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00567 349 Gene3D - 231 348 - -
Accr4g00567 349 Pfam AUX/IAA family 70 347 IPR033389 -
Accr4g00567 349 ProSiteProfiles PB1 domain profile. 236 338 IPR000270 GO:0005515
Accr4g00567 349 FunFam Auxin-responsive protein 232 348 - -
Accr4g00567 349 MobiDBLite consensus disorder prediction 71 117 - -
Accr4g00567 349 SUPERFAMILY CAD & PB1 domains 231 337 - -
Accr4g00567 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 64 343 IPR003311 GO:0005634|GO:0006355
Accr4g00567 349 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00567 Accr-Chr4 5600911 5602920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00567 250 341 B3 DNA Binding Superfamily AT1G19220 32.609 3.16e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr4g00567 AUX_IAA 1.9e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00567 K14484 - gmx:100815447 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00567 4 5600911 5602920 Accr4g00567 4 5600911 5602920 ECH